View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20001_low_11 (Length: 434)
Name: NF20001_low_11
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 274057 - 273639
Alignment:
| Q |
1 |
ggaaggaggatgattgatcggtgtaggatatttaaaagggggtgggaatgaaaaaagagggatggggatagtaatgagaaacacacgtaaacgggccggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
274057 |
ggaaggaggatgattgatcggtgtaggatatttaaaaaggggtgggaatgaaaaaagagggatggggatagtaatgagaaacacacgtaaacgggccggg |
273958 |
T |
|
| Q |
101 |
tcgggcgataatcactgagtggctgctaagtctggttgattttgaaattgaaatctatc-aaaaacagaagacagacaatttgaaaatttgaaataaatt |
199 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
273957 |
tcgggcgataataactcagtggctg---agtctggttgattttgaaattgaaatctatcaaaaaacagaagacagagaatttgaaaatttgaaataaatt |
273861 |
T |
|
| Q |
200 |
gaatacaaacac--acactcaatcgaatctaaagagtaaaagaaattgttgtgttttggaaaccctagattagatagataggtagtgagttgaacaatgg |
297 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
273860 |
gaatacaaacacaaacactttatcgaatctaaagagtaaaagaaattgttgtgttttggaaaccctagattagatagataggtagtgagttgaacaatgg |
273761 |
T |
|
| Q |
298 |
------caacaccaacaacagtggtatcctccggtcgagaattaacaaaccctccgtcagacggaatctcaaacattcgattctcaaaccacagtgatca |
391 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
273760 |
caacaacaacaacaacaacagtggtatcctccggtcgagaattaacaaaccctccgtcagacggaatctcaaacattcgattctcaaaccacagtgatca |
273661 |
T |
|
| Q |
392 |
tcttcttgtctcctcttgggac |
413 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
273660 |
tcttcttgtctcctcttgggac |
273639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University