View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20001_low_12 (Length: 421)
Name: NF20001_low_12
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Complemental strand, 35221221 - 35220828
Alignment:
| Q |
13 |
aaaataatggagattatacagttcgtagtgcctatcgtctttgtatgcaagaactgctcgacgtttctgcttttaaaattcttgaaaattgggcaaagat |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
35221221 |
aaaataatggagattatacagttcgtagtgcctatcgtctttgtatgcaagaactgctcgacgtttctgcttttaaaattcctggaaattgggcaaagat |
35221122 |
T |
|
| Q |
113 |
ttggaagttaaaagcgcctcccaaggtcaaaaacttcatgtggagaattgttaggaatgtgttgccaacaagaatgcggcttagagataagagagtgaat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35221121 |
ttggaagttaaaagcgcctcccaaggtcaaaaacttcatgtggagaattgttaggaatgtgttgccaacaagaatgcggtttagagataagagagtgaat |
35221022 |
T |
|
| Q |
213 |
tgttctgacaattgtgttctttgtgattctggtatagaaaataactttcatctattattttcctgtccaaatagcatcaatgtatggaatttgtctacta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35221021 |
tgttctgacaattgtgttctttgtgattctggtatagaaaataactttcatctattattttcctgtccaaatagcatcaatgtatggaatttgtctgcta |
35220922 |
T |
|
| Q |
313 |
tatccactgctgtcatgtctgttgcaagtgaagaggtggactacaaagcttgtatttttcgcattttgcaggacttttcaagtggagatgcatc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35220921 |
tatccactgctgtcatgtctgttgcaagtgaagaggtggactgcaaagcttgtatttttcgcattttgcaggacttttcaagtggagatgcatc |
35220828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 7073355 - 7073279
Alignment:
| Q |
110 |
gatttggaagttaaaagcgcctcccaaggtcaaaaacttcatgtggagaattgttaggaatgtgttgccaacaagaa |
186 |
Q |
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||||||||| ||||||| ||| ||||| || ||||| ||||||| |||| | |||||||||| |||||||||||| |
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| T |
7073355 |
gatttggaaattaaaagtgccacccaaagttaaaaatttcatgttgagactcactaggaatgtgctgccaacaagaa |
7073279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 26 - 406
Target Start/End: Original strand, 29991416 - 29991796
Alignment:
| Q |
26 |
ttatacagttcgtagtgcctatcgtctttgtatgcaagaactgctcgacgtttctgcttttaaaattcttgaaaattgggcaaagatttggaagttaaaa |
125 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||| |
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| T |
29991416 |
ttattcagttcgtattgcctatcgtctttgtatgcaagaactgctcgacgtttctgcttttaaaattccaggaaattggacaaagatttggaagttaaaa |
29991515 |
T |
|
| Q |
126 |
gcgcctcccaaggtcaaaaacttcatgtggagaattgttaggaatgtgttgccaacaagaatgcggcttagagataagagagtgaattgttctgacaatt |
225 |
Q |
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| ||||||||| || ||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||| | |||| || |
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| T |
29991516 |
gtgcctcccaaagttaaaaacttcatgtggagaattgtcagaaatgtgttaccaacaagaatgcggctcagagataagagagtgaattgtccggacagtt |
29991615 |
T |
|
| Q |
226 |
gtgttctttgtgattctggtatagaaaataactttcatctattattttcctgtccaaatagcatcaatgtatggaatttgtctactatatccactgctgt |
325 |
Q |
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|||| ||||||||||||||| |||| ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||| |
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| T |
29991616 |
gtgtgctttgtgattctggtgtagagaataactttcatctatttttttcttgtccaaatagcagtaatgtatggaatttgtctattgtatccactgctgt |
29991715 |
T |
|
| Q |
326 |
catgtctgttgcaagtgaagaggtggactacaaagcttgtatttttcgcattttgcaggacttttcaagtggagatgcatc |
406 |
Q |
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|| ||||| ||||||||||| | |||| ||| |||||||||||||| |||||||||||||| |||||| ||||||||| |
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| T |
29991716 |
cagtgctgttacaagtgaagagatagactgcaaggcttgtatttttcgaattttgcaggacttgtcaagtatagatgcatc |
29991796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 147 - 406
Target Start/End: Complemental strand, 5562553 - 5562294
Alignment:
| Q |
147 |
ttcatgtggagaattgttaggaatgtgttgccaacaagaatgcggcttagagataagagagtgaattgttctgacaattgtgttctttgtgattctggta |
246 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||||||||| |
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| T |
5562553 |
ttcatgtggagaattgttagaaatgtgttaccaacaagaatgcggctcagagataagagagtgaattgtccggacaattgtgtgctttgtgattctggtg |
5562454 |
T |
|
| Q |
247 |
tagaaaataactttcatctattattttcctgtccaaatagcatcaatgtatggaatttgtctactatatccactgctgtcatgtctgttgcaagtgaaga |
346 |
Q |
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|||| ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| || ||||||||| ||||| ||||| |||||||||| |
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| T |
5562453 |
tagagaataactttcatctattcttttcttgtccaaatagcagcaatgtatggaatttgtctgctgtatccactgttgtcaatgctgttacaagtgaaga |
5562354 |
T |
|
| Q |
347 |
ggtggactacaaagcttgtatttttcgcattttgcaggacttttcaagtggagatgcatc |
406 |
Q |
| |
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| | |||| || |||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
5562353 |
gatagactgcatggcttgtatttttcgaattttgcaggacttgtcaagtggagatgcatc |
5562294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 44327975 - 44328064
Alignment:
| Q |
57 |
atgcaagaactgctcgacgtttctgcttttaaaattcttgaaaattgggcaaagatttggaagttaaaagcgcctcccaaggtcaaaaac |
146 |
Q |
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|||||| |||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| |||||||| || |||||| |
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| T |
44327975 |
atgcaataactgctcgacgtttctgcttttaaaattcctggaaattgggtaaagatttggaagttaaaagcacctcccaaagttaaaaac |
44328064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 17062672 - 17062510
Alignment:
| Q |
24 |
gattatacagttcgtagtgcctatcgtctttgtatgcaagaactgctcgacgtttctgcttttaaaattcttgaaaattgggcaaagatttggaagttaa |
123 |
Q |
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|||||| | |||| ||||||||||| | ||||||||||||| ||| | || ||||| |||||||||| |||||||||| ||||||||| |||| |
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| T |
17062672 |
gattattcggttcctagtgcctatcatttttgtatgcaagagctgttggatacttctgtgtttaaaattccagaaaattgggatttgatttggaaattaa |
17062573 |
T |
|
| Q |
124 |
aagcgcctcccaaggtcaaaaacttcatgtggagaattgttaggaatgtgttgccaacaagaa |
186 |
Q |
| |
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||| ||||||||| || ||||| || ||||||||| | |||||||||| |||||||||||| |
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| T |
17062572 |
aagtgcctcccaaagttaaaaattttatgtggagactcactaggaatgtgctgccaacaagaa |
17062510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 22069023 - 22069131
Alignment:
| Q |
128 |
gcctcccaaggtcaaaaacttcatgtggagaattgttaggaatgtgttgccaacaagaatgcggcttagagataagagagtgaattgttctgacaattgt |
227 |
Q |
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||||||||| || ||||| |||||||||||| | |||||||||||||||| ||||||| ||| || ||||| ||||| |||||| | || |||||| |
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| T |
22069023 |
gcctcccaaagttaaaaatttcatgtggagactcattaggaatgtgttgcctacaagaacgcgactccaggataaaagagtaaattgtccggaaaattgt |
22069122 |
T |
|
| Q |
228 |
gttctttgt |
236 |
Q |
| |
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||||||||| |
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|
| T |
22069123 |
gttctttgt |
22069131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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