View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20001_low_19 (Length: 349)
Name: NF20001_low_19
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 9 - 349
Target Start/End: Original strand, 45693306 - 45693646
Alignment:
| Q |
9 |
gagatgaataaacctgcacaagacgaacaatcctctaaccaaagagacaatacaacggtgccgccatacgcgtaacacctaaatttgcttattttacata |
108 |
Q |
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| T |
45693306 |
gagatgagtaaacctgcacaagacgaacaatcctctaaccaaagagacaatacaacggtgccgccatacgcgtaacacctaaatttgcttattttacata |
45693405 |
T |
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| Q |
109 |
atgcataattgattctcataaattcccaaattcaatgtctttgcttatatttacacaatacaagatcaataaagtacaaattgtaactttggatagtgct |
208 |
Q |
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| T |
45693406 |
atgcataattgattctcataaattcccaaattcaatgtctttgcttatatttacccaatacaagattaataaagtacaaattgtaactttggatagtgct |
45693505 |
T |
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| Q |
209 |
acattagattaattgaaactggattctaatatcattctgcatgcatgcatgcattcttaggaaaattgggttctagagcacgcaaaactcaaggctagga |
308 |
Q |
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| T |
45693506 |
acattagattaattgaaactggattctaatatcattctgcatgcatgcatgcattcttaggaaaattgggttctagagcacgcaaaactcaaggctagga |
45693605 |
T |
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| Q |
309 |
tggaagtgcttcagagaaatcaaaggtactaattaatattt |
349 |
Q |
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| T |
45693606 |
tggaagtgcttcagagaaatcaaaggtactaattaatattt |
45693646 |
T |
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