View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20001_low_2 (Length: 836)
Name: NF20001_low_2
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 618; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 20 - 641
Target Start/End: Original strand, 31528177 - 31528798
Alignment:
| Q |
20 |
agtggctcggaatataaacattctgggacactatgagttcctaaataaccaagatttttgtaggaacaaagtagaagaagacagtgtacaagccatattg |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31528177 |
agtggctcggaatataaacattctgggacactatgagttcctaaataaccaagatttttgtaggaacaaagtagaagaagacagtgtacaagccatattg |
31528276 |
T |
|
| Q |
120 |
tgatatcaaaagtttgaatagcatgacctttgaacaaaatgtcgatgttgagagctgaaaccaatacacatgaagatgcccaccagacagagtttagtat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31528277 |
tgatatcaaaagtttgaatagcatgacctttgaacaaaatgtcgatgttgagagctgaaaccaatacacatgaagatgcccaccagacagagtttagtat |
31528376 |
T |
|
| Q |
220 |
ttgaatccatttgacttgctgaacaagcaaagaaactgttatagatatccaaatgattcctctgataatgcaagctaaccagcttagctccttagagtta |
319 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31528377 |
ttgaatccatttgacttgctgaacaagcaaagaaactgttatagatatccaaatgattcctctgataatgcaagctaaccagcttagatccttagagtta |
31528476 |
T |
|
| Q |
320 |
ccagttttgtctaagagattccaaaatccagtggcaaaatatgcaatgctagtaaaagcacaacagattgagacaagtgagaaaatccaactttttgtct |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31528477 |
ccagttttgtctaagagattccaaaatccagtggcaaaatatgcaatgctagtaaaagcacaacagattgagacaagtgagaaaatccaactttttgtct |
31528576 |
T |
|
| Q |
420 |
ggctcttatttgcggaagttgttctggttaaactgatagccaaggacgtgtagtaggcgcagacaaaaagtatattgatagtgtctattgcactccatag |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31528577 |
ggctcttatttgcggaagttgttctggttaaactgatagccaaggacgtgtagtaggcgcagacaaaaagtatattgatagtgtctattgcactccatag |
31528676 |
T |
|
| Q |
520 |
agaacaaaaagaagtgaaatcaaaatccttcatacatatccatgagaaatcaccttcatatccttcaaagggaaacaaacaataaccaacgtttagtgtt |
619 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31528677 |
agaacaaaaagaagtgaaatcaaaatccttcatacatatccatgagaaatcaccttcatatccttcaaagggaaacaaacaataaccaacgtttagtgtt |
31528776 |
T |
|
| Q |
620 |
aaaattgttggaagttatgtgg |
641 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
31528777 |
aaaattgttggaagttatgtgg |
31528798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 703 - 836
Target Start/End: Original strand, 31528847 - 31528980
Alignment:
| Q |
703 |
ctccaagttactctataaataagctacctcattgtaccattcaatcattcttttatcggtctattcattcaactatgaattcctatgagtattcttctta |
802 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31528847 |
ctccaagttactctataaataagctacctcattgtaccattcaatcattcttttatcggtctattcattcaactatgaattcctatgagtattcttctta |
31528946 |
T |
|
| Q |
803 |
tgaatacaactatgcttgctatcttgcttacatc |
836 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
31528947 |
tgaatacaactatgcttgctatcttgcttacatc |
31528980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 564
Target Start/End: Original strand, 5292186 - 5292707
Alignment:
| Q |
34 |
taaacattctgggacactatgagttcctaaataaccaagatttttgtaggaacaaagtagaagaagacagtgtacaagccatattgtgatatcaaaagtt |
133 |
Q |
| |
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||||| |||| | |||||||||||||||| |||| ||||||||||| ||| |||| ||||||||| | ||||||||||| | |||||||| ||| |
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| T |
5292186 |
taaaccttcttgtacactatgagttcctatataatcaagatttttgaaggcacaatatagaagaaggaaatgtacaagccactgtacaatatcaaatgtt |
5292285 |
T |
|
| Q |
134 |
tgaatagcatgacctttgaacaaaatgtcgatgttgagagctgaaaccaatacacatgaagatgcccaccagacagagtttagtatttgaatccatttga |
233 |
Q |
| |
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| ||| |||||| | | |||| ||| || |||||||||| ||||||||||||||| ||| ||| |||||| | |||| ||| ||| ||||||||||| |
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|
| T |
5292286 |
tcaattgcatgatttcttaacagaatttcaatgttgagagatgaaaccaatacacaagaaaatgtccaccatatagagattaatatcctaatccatttga |
5292385 |
T |
|
| Q |
234 |
cttgctgaacaagcaaagaaactgttatagatatccaaatgattcctctgataatgcaagctaaccagcttagctccttagagttaccagttttgtctaa |
333 |
Q |
| |
|
|| ||||| | ||| ||||| | | ||| |||||||| | ||| ||||||||||| || || | || ||||||| ||||||| ||| |
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| T |
5292386 |
ctctttgaacgatcaaggaaacagacaaagaaatccaaatcaatcccttgataatgcaa---------ctcagtttctcagagttatcagttttagctat |
5292476 |
T |
|
| Q |
334 |
gagattccaaaatccagtggcaaaatatgcaatgctagtaaaagcacaacagattgagacaagtgagaaaatccaactttttgtctggctcttatttgcg |
433 |
Q |
| |
|
|| || ||| |||||| | ||| ||||||||||| || | ||||||| |||||||||| ||||||||| | |||| ||||| ||||| |
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| T |
5292477 |
gaaatcccacaatccaatactgaaaaatgcaatgctaatagtaccacaacaaattgagacaataatgaaaatccagcattttccgtggcttccatttgta |
5292576 |
T |
|
| Q |
434 |
gaagttgttctggttaaactgatagccaaggacgtgtagtaggcgcagacaaaaagtatattgatagtgtctattgcactccatagagaacaaaaagaag |
533 |
Q |
| |
|
||| || ||||| ||||| ||||| ||| || ||| | ||| | || ||||| ||||||||||||||||||||| |||| | ||||||| |||||| |
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| T |
5292577 |
gaactttttctgattaaagtgataatcaaagatgtgcaatagacacatacaaagagtatattgatagtgtctattaagctcctttgagaacataaagaat |
5292676 |
T |
|
| Q |
534 |
tgaaatcaaaatccttcatacatatccatga |
564 |
Q |
| |
|
||||||| |||| ||||| ||| |||||||| |
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| T |
5292677 |
tgaaatcgaaattcttcaaacaaatccatga |
5292707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 395
Target Start/End: Complemental strand, 15124073 - 15123800
Alignment:
| Q |
122 |
atatcaaaagtttgaatagcatgacctttgaacaaaatgtcgatgttgagagctgaaaccaatacacatgaagatgcccaccagacagagtttagtattt |
221 |
Q |
| |
|
||||||||||||| ||| ||||| ||| |||| ||| || |||||||||| ||||||||||| ||| ||||| |||||| | |||||||| |||| |
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|
| T |
15124073 |
atatcaaaagtttcaatgacatgattttttaacagaatttcaatgttgagagatgaaaccaatatacaagaagaaagccaccatatagagtttaatattc |
15123974 |
T |
|
| Q |
222 |
gaatccatttgacttgctgaacaagcaaagaaactgttatagatatccaaatgattcctctgataatgcaagctaaccagcttagctccttagagttacc |
321 |
Q |
| |
|
|| | |||||| | ||||||| ||| ||||| | | ||| |||||||||| |||| ||||||||||| ||| | | | || |||| ||||||| | |
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|
| T |
15123973 |
taaccaatttgattctttgaacaatcaatgaaacagcaaaagaaatccaaatgaatcctttgataatgcaaactaccaaattcagttcctcagagttatc |
15123874 |
T |
|
| Q |
322 |
agttttgtctaagagattccaaaatccagtggcaaaatatgcaatgctagtaaaagcacaacagattgagacaa |
395 |
Q |
| |
|
|||||| ||| |||||||| || ||| ||| ||||||||||| ||| ||||||||||||||||||| |
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| T |
15123873 |
agttttagctataagattccataagccaaaactgaaaaatgcaatgctaataagtgcacaacagattgagacaa |
15123800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 726 - 805
Target Start/End: Original strand, 1914085 - 1914165
Alignment:
| Q |
726 |
ctacctcattgtaccattcaatcattctttta-tcggtct-attcattcaactatgaattcctatgagtattcttcttatga |
805 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||| |||||||| ||||||| || ||||||||| |||||| |||| |
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|
| T |
1914085 |
ctacctcattgtaccattcaatca-tcttttattcaatctaattcattctactatgagtttctatgagtaatcttctcatga |
1914165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 703 - 750
Target Start/End: Complemental strand, 31155683 - 31155636
Alignment:
| Q |
703 |
ctccaagttactctataaataagctacctcattgtaccattcaatcat |
750 |
Q |
| |
|
|||||| ||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
31155683 |
ctccaaattactctataaattagatacctcattgtaccattcaatcat |
31155636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 764 - 836
Target Start/End: Complemental strand, 20516040 - 20515969
Alignment:
| Q |
764 |
tattcattcaactatgaattcctatgagtattcttcttatgaatacaactatgcttgctatcttgcttacatc |
836 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| |||| |||| |||| | |||||||||||||||| |
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|
| T |
20516040 |
tattcattcaa-tatgaatttctatgagtattcttctcatgattacacatatgttctctatcttgcttacatc |
20515969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 785 - 836
Target Start/End: Complemental strand, 31155610 - 31155560
Alignment:
| Q |
785 |
ctatgagtattcttcttatgaatacaactatgcttgctatcttgcttacatc |
836 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||| || |||||||| |
|
|
| T |
31155610 |
ctatgagtattcttctcatgaatacaactatgctt-ctatttttcttacatc |
31155560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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