View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20001_low_20 (Length: 348)
Name: NF20001_low_20
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 46359929 - 46360243
Alignment:
| Q |
1 |
tgaatatcacaagttgatccaccatcttcgcttgatggatatggattgcaaaatggcaagagagcagctagaggaaatggagcccatggatatataggga |
100 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46359929 |
tgaatatcacaagttgatccacaatcttcgcttgatggatatggattgcaaaatggcaagagagcagctagaggaaatggagcccatggatatataggga |
46360028 |
T |
|
| Q |
101 |
agtggcaataacgcagataaacgaaatggacggtatagcttccgatgtggcataccagcagctaggtgaaatgtatcttaatattagggcattattttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46360029 |
agtggcaataacgcagataaacgaaatggacggtatagcttccgatgtggcataccagcagctaggtgaaatgtatcttaatattagggcattattttga |
46360128 |
T |
|
| Q |
201 |
taggaagttagaatcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagttggatgaatttttgatgtttttccttctaata |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46360129 |
taggaagttagaatcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagttggatgaatttttgatgtttttccttctaata |
46360228 |
T |
|
| Q |
301 |
gattgttatgttgaa |
315 |
Q |
| |
|
||||||||||||||| |
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| T |
46360229 |
gattgttatgttgaa |
46360243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 44461124 - 44461434
Alignment:
| Q |
1 |
tgaatatcacaagttgatccaccatcttcgcttgatggatatggattgcaaaatggcaagagagcagctagaggaaatggagcccatggatatataggga |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
44461124 |
tgaatatcacaagttgatccactatcttcgcttgatggatatggattgcaaaatggcaagggagcagctagaggaaatggagcccatggata----ggga |
44461219 |
T |
|
| Q |
101 |
agtggcaataacgcagataaacgaaatggacggtatagcttccgatgtggcataccagcagctaggtgaaatgtatcttaatattagggcattattttga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44461220 |
agtggcaataacgcagataaacgaaatggacagtatagcttccaatgtggcataccagcagctaggtgaaatgtatcttaatattagggcattattttga |
44461319 |
T |
|
| Q |
201 |
taggaagttagaatcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagttggatgaatttttgatgtttttccttctaata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
44461320 |
taggaagttagaatcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagtcggatgaattttttatgtttttccttctaata |
44461419 |
T |
|
| Q |
301 |
gattgttatgttgaa |
315 |
Q |
| |
|
||||||||||||||| |
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|
| T |
44461420 |
gattgttatgttgaa |
44461434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 44468657 - 44468967
Alignment:
| Q |
1 |
tgaatatcacaagttgatccaccatcttcgcttgatggatatggattgcaaaatggcaagagagcagctagaggaaatggagcccatggatatataggga |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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|
| T |
44468657 |
tgaatatcacaagttgatccactatcttcgcttgatggatatggattgcaaaatggcaagggagcagctagaggaaatggagcccatggata----ggga |
44468752 |
T |
|
| Q |
101 |
agtggcaataacgcagataaacgaaatggacggtatagcttccgatgtggcataccagcagctaggtgaaatgtatcttaatattagggcattattttga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44468753 |
agtggcaataacgcagataaacgaaatggacagtatagcttccaatgtggcataccagcagctaggtgaaatgtatcttaatattagggcattattttga |
44468852 |
T |
|
| Q |
201 |
taggaagttagaatcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagttggatgaatttttgatgtttttccttctaata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
44468853 |
taggaagttagaatcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagtcggatgaattttttatgtttttccttctaata |
44468952 |
T |
|
| Q |
301 |
gattgttatgttgaa |
315 |
Q |
| |
|
||||||||||||||| |
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|
| T |
44468953 |
gattgttatgttgaa |
44468967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 34501571 - 34501480
Alignment:
| Q |
1 |
tgaatatcacaagttgatccaccatcttcgcttgatggatatggattgcaaaatggcaagagagcagctagaggaaatggagcccatggata |
92 |
Q |
| |
|
||||||||| |||||||||||| |||| |||||||| |||||| |||||||||||||| ||| |||||||||||||||| ||||||| |
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| T |
34501571 |
tgaatatcagaagttgatccactctctttccttgatggccatggatataaaaatggcaagagaacagttagaggaaatggagcctatggata |
34501480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 41584259 - 41584333
Alignment:
| Q |
168 |
gaaatgtatcttaatattagggcattattttgataggaagttagaatcttgatgcaaaattaattgagttgagaa |
242 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||| | ||||||||||| |||||||||||||||||| ||||| |
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|
| T |
41584259 |
gaaatgaatcttaatattagggcatcattttgataatatgttagaatcttaatgcaaaattaattgagtggagaa |
41584333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 38604269 - 38604184
Alignment:
| Q |
7 |
tcacaagttgatccaccatcttcgcttgatggatatggattgcaaaatggcaagagagcagctagaggaaatggagcccatggata |
92 |
Q |
| |
|
||||||||| |||||| |||| |||||| || ||||||| | |||||| ||| || ||||||||||||||||||||| ||||||| |
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| T |
38604269 |
tcacaagttaatccactctctttgcttgaaggctatggataggaaaatgacaatagtgcagctagaggaaatggagcctatggata |
38604184 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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