View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20001_low_22 (Length: 346)
Name: NF20001_low_22
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 3 - 331
Target Start/End: Original strand, 30889797 - 30890125
Alignment:
| Q |
3 |
atcaaggagaactttcaatgattgcacaacaagtaaccagacaaaatagcacaatatcgggaggcatgttaacaatttcgcgccaaggaagcacgacttc |
102 |
Q |
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| T |
30889797 |
atcaaggagaactttcaatgattgcacaacaagtaaccagacaaagtagcacgatatcgggaggcatgttaacaatttcgcgccaaggaagcacgacttc |
30889896 |
T |
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| Q |
103 |
ccatgtttcttatagtattaaggacaatattgtcaatctctttagtagcatgcatgaaaatagtcctcctgaaggtggaggttcaagaggaagtatgcta |
202 |
Q |
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| T |
30889897 |
ccatgtttcttatagtattaaggacaatattgtcaatctctttagtagcatgcatgaaaatagtcctcctgaaggtggaggttcaagaggaagtatgcta |
30889996 |
T |
|
| Q |
203 |
atttctaaagtgtcgagtaatgatccgagtccctttggtacaaatgacaacctgcatactccattacttctacatgaaggtagtgttttttatcaattta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30889997 |
atttctaaagtgtcgagtaatgatccgagtccctttggtacaaatgacaacctgcatactccattacttctacatgaaggtagtgttttttatcaattta |
30890096 |
T |
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| Q |
303 |
ataataacaataattacatacaagatatg |
331 |
Q |
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| T |
30890097 |
ataataacaataattacatacaagatatg |
30890125 |
T |
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