View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20001_low_27 (Length: 275)
Name: NF20001_low_27
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_low_27 |
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| [»] scaffold0854 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 25389121 - 25389343
Alignment:
| Q |
6 |
tggcggagccaagtagaagggtatgggggcaccagcctccacaaacttttgagatttatttttaatagtatatatgttgatacattgactagaccacatc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25389121 |
tggcggagccaagtagaagggtatgggggcaccagcctgcacaaacttttgagatttctttttaatagtatatatgttgatacattgactagaccacatc |
25389220 |
T |
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| Q |
106 |
aaccaatagaaattcaacaaactaagaagataaagagtttatttcctataaaatgtccatatggatcttgtttcttcccatatgttccctgtttcatcat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25389221 |
aaccaatagaaattcaacaaactaagaagataaagagtttatttcctataaaatgtccatatggatcttgtttcttcccatatgttccctgtttcatcat |
25389320 |
T |
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| Q |
206 |
tatccatttttatcgatgtaatt |
228 |
Q |
| |
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|||| |||||||||||||||||| |
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| T |
25389321 |
tatcaatttttatcgatgtaatt |
25389343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 16975195 - 16975429
Alignment:
| Q |
7 |
ggcggagccaagtagaagggtatgggggcaccagcctccacaaacttttgaga---tttatttttaata---gtatatatgttgatacattgactagacc |
100 |
Q |
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||||||||||||||||||||| ||||||| |||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| || |
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| T |
16975195 |
ggcggagccaagtagaagggtttgggggctggtgcctgcacaaacttttgagaatttttatttttaatactagtatatatgttgatacattgactaggcc |
16975294 |
T |
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| Q |
101 |
acatcaaccaa----------tagaaattcaacaaactaagaagataaagagtttatttcctataaaatgtccatatggatcttgtttcttcccatatgt |
190 |
Q |
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| T |
16975295 |
acatccaccaatcacacccaatagaaattcaacaaactaagaagataaagagtttatttcctataaaatgtcctcatggatgttgtttcttcccatatgt |
16975394 |
T |
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| Q |
191 |
tccctgtttcatcattatccatttttatcgatgta |
225 |
Q |
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| T |
16975395 |
tccctgtttcctcattatccacttttatcggtgta |
16975429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 38437624 - 38437846
Alignment:
| Q |
6 |
tggcggagccaagtagaagggtatgggggcaccagcctccacaaacttttgagatttatttttaatagtatatatgttgatacattgactagaccacatc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38437624 |
tggcggagccaagtagaagggtatgggggcaccagcctgcacaaacttttgagatttctttttaatagtatatatgttgatacattgactagaccacatc |
38437723 |
T |
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| Q |
106 |
aaccaatagaaattcaacaaactaagaagataaagagtttatttcctataaaatgtccatatggatcttgtttcttcccatatgttccctgtttcatcat |
205 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38437724 |
caccaatagaaattcaacaaactaagaagataaaaagtttatttcctataaaatgtccatatggatcttgtttcttcccatatgttccctgtttcatcat |
38437823 |
T |
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| Q |
206 |
tatccatttttatcgatgtaatt |
228 |
Q |
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||||||||||||||||||||||| |
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| T |
38437824 |
tatccatttttatcgatgtaatt |
38437846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 693 - 457
Alignment:
| Q |
9 |
cggagccaagtagaagggtatgggggcaccagcctccacaaacttttgaga---tttatttttaata---gtatatatgttgatacattgactagaccac |
102 |
Q |
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|||||||||||||||| |||||||| ||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||| |||| |
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| T |
693 |
cggagccaagtagaagcgtatgggg-cacaagcctacacaaacttttgagaatttttatttttaatactagtatatatgttgatatattgattaggccac |
595 |
T |
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| Q |
103 |
atcaaccaat--------agaaattcaacaaactaagaagataaagagtttat----ttcctataaaatgtccatatggatcttgtttcttcccatatgt |
190 |
Q |
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||| |||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| || ||| |||||||||||||||||| |
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| T |
594 |
atccaccaatcacccaatagaaattcaacaaactaagaagataaagagcttatatatttcctataaaatgtcctcatcgatgttgtttcttcccatatgt |
495 |
T |
|
| Q |
191 |
tccctgtttcatcattatccatttttatcgatgtaatt |
228 |
Q |
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||| |||||||||||| |||| |||||||| ||||||| |
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| T |
494 |
tccatgtttcatcattctccacttttatcggtgtaatt |
457 |
T |
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