View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20001_low_30 (Length: 258)
Name: NF20001_low_30
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 32371729 - 32371968
Alignment:
| Q |
1 |
ataaataaatactgtttggaattgtatttatatcatggttggaaaactcgcaagtcagcttgtagacttggccaagtttacgagcccagcaacccataca |
100 |
Q |
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| T |
32371729 |
ataaataaatactgtttggaattgtatttatatcatggttaaaaagcttgcaagtcagcttgtagacttggccaagtttacgagcccagcaacccataca |
32371828 |
T |
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| Q |
101 |
agttggctcgccaacataatcgttttctggacagatgcgagaaaagctcacgattatggagttcgaannnnnnnctaaaaaagcccaaatcgcagtaccg |
200 |
Q |
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| T |
32371829 |
agttggctcacgaacatattcgttttctggacagatgcgagaaaaactcacgattatggagttcgaatttttttctaaaaaagcccaaatcgcagtaccg |
32371928 |
T |
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| Q |
201 |
cctcacagtttattgaattctaagagttgtatcctaatat |
240 |
Q |
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| T |
32371929 |
cctcacagtttattgaattctaagagttgtatcctaatat |
32371968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 32365101 - 32364989
Alignment:
| Q |
12 |
ctgtttggaattgtatttatatcatggttggaaaactcgcaagtcagcttgtagacttggccaagtttacgagcccagcaacccatacaagttggctcgc |
111 |
Q |
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|||| |||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| ||||| |
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| T |
32365101 |
ctgtctggaattgtatttatatcatggttagcaaactcgcaagtcagctcgtagagttggccaagtttacgagtccagctacccatacaagttgactcgc |
32365002 |
T |
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| Q |
112 |
caacataatcgtt |
124 |
Q |
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| T |
32365001 |
gaacataatcgtt |
32364989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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