View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20001_low_31 (Length: 253)
Name: NF20001_low_31
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 28926650 - 28926430
Alignment:
| Q |
21 |
gcttttgaataatttttataggttcccattattgctacctttgcggtagagcatcgaagtttatgtgcttgtgttgcccaatagctgtttgtggaagatg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28926650 |
gcttttgaataatttttataggttcccattattgctacctttgcggtagagcatcgaagtttatgtgcttgtgttgcccaatagctgtttgtggaagatg |
28926551 |
T |
|
| Q |
121 |
cttctatgatgctgaatttgccactgtcaaaagaaacaaaggattttgtaggcactgctcaaaacttgcatttctaattgagacaaatgctgatgttgat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28926550 |
cttctatgatgctgaatttgccactgtcaaaagaaacaaaggattttgtaggcactgctcaaaacttgcatttctaattgagacaaatgctgatgttgat |
28926451 |
T |
|
| Q |
221 |
tctgatggggtgagatatttt |
241 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
28926450 |
tctgatggggtgagatgtttt |
28926430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 28917385 - 28917168
Alignment:
| Q |
22 |
cttttgaataatttttataggttcccattattgctacctttgcggtagagcatcgaagtttatgtgcttgtgttgcccaatagctgtttgtggaagatgc |
121 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
28917385 |
cttttgaataatttt-ataggttcccatttttgctacctttgcggtagagcatcgaagtttaggtgcttctgttgcccaatagctgtttgtggaaaatgc |
28917287 |
T |
|
| Q |
122 |
ttctatgatgctgaatttgccactgtcaaaagaaacaaaggattttgtaggcactgctcaaaacttgcatttctaattgagacaaatgctgatgttgatt |
221 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28917286 |
ttctatgatgctgaatttgctactgtcaaaacaaccaaaggattttgtaggcactgctcaaaacttgcatttctaattgagacaaatgctgacattgatt |
28917187 |
T |
|
| Q |
222 |
ctgatggggtgagatattt |
240 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
28917186 |
ctgatggggttagatattt |
28917168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 28903613 - 28903397
Alignment:
| Q |
25 |
ttgaataatttttataggttcccattattgctacctttgcggtagagcatcgaagtttatgtgcttgtgttgcccaatagctgtttgtggaagatgcttc |
124 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| |||||| || ||| ||||||||||||||||||||| |||||||| ||||||||| ||||||| |
|
|
| T |
28903613 |
ttgaataatttttatagcttcccattcttgctaccaatgcggtggaatatcaaagtttatgtgcttgtgttgcacaatagctttttgtggaaaatgcttc |
28903514 |
T |
|
| Q |
125 |
tatgatgctgaatttgccactgtcaaaagaaacaaaggattttgtaggcactgctcaaaacttgcatttctaattgagacaaatgctgatgttgattctg |
224 |
Q |
| |
|
|||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| || ||||||| |
|
|
| T |
28903513 |
tatggtgctgaatttgctcttgtcaaaggaaacaaaggattttgtaggcactgctcaaaacttgcctttctaattgagaaaaatgctgacgtagattctg |
28903414 |
T |
|
| Q |
225 |
atggggtgagatatttt |
241 |
Q |
| |
|
||||||| |||| |||| |
|
|
| T |
28903413 |
atggggtaagatttttt |
28903397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 28936852 - 28936635
Alignment:
| Q |
23 |
ttttgaataatttt-tataggttcccattattgctacctttgcggtagagcatcgaagtttatgtgcttgtgttgcccaatagctgtttgtggaagatgc |
121 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||| | ||| ||||| | ||||||||||||||||||| ||||||| |||||||||||||| ||| |
|
|
| T |
28936852 |
ttttgaataattttatataggttcccactattgctacatatgccgtagaaaaccgaagtttatgtgcttgtgctgcccaaaagctgtttgtggaaattgc |
28936753 |
T |
|
| Q |
122 |
ttctatgatgctgaatttgccactgtcaaaagaaacaaaggattttgtaggcactgctcaaaacttgcatttctaattgagacaaatgctgatgttgatt |
221 |
Q |
| |
|
| | | | ||||| |||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
28936752 |
taccagggtgctgtatttgctaatgtcaaacgaaacaaaggattttgtgggcactgctcaaaacttgcatttctaattgaggaaaatgctgaggttgatt |
28936653 |
T |
|
| Q |
222 |
ctgatggggtgagatatt |
239 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
28936652 |
ctgatggggtaagatatt |
28936635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 28893611 - 28893393
Alignment:
| Q |
22 |
cttttgaataatttttataggttcccattattgctacctttgcggtagagcatcgaagtttatgtgcttgtgttgcccaatagctgtttgtggaagatgc |
121 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||| | ||||||||||||||||||||||||| |||||||||||| ||||| ||| |||| |
|
|
| T |
28893611 |
cttttgaataatttt-ataggttcccattattgtaacggatgccatggagcatcgaagtttatgtgcttgtgctgcccaatagctttttgtagaaaatgc |
28893513 |
T |
|
| Q |
122 |
ttctatgatgctgaatttgccactgtcaaaagaaacaaaggattttgtaggcactgctcaaaacttgcatttctaattgagacaaatgctgatgttgatt |
221 |
Q |
| |
|
||| ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | | ||||||||| ||||| |||||| |||| |
|
|
| T |
28893512 |
ttccatggtgctgaatttgctcttgtcaaaagaaacagaggattttgtaggcactgctcaaaacttgcctatttaattgagaaaaatgttgatgtcgatt |
28893413 |
T |
|
| Q |
222 |
ctgatggggtgagatatttt |
241 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
28893412 |
ctgatggggtaagatatttt |
28893393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University