View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20001_low_32 (Length: 250)
Name: NF20001_low_32
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_low_32 |
 | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
| [»] scaffold1910 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 25971453 - 25971681
Alignment:
| Q |
8 |
tcaataacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtc |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25971453 |
tcaataacatcacaggtactcctactttcaatcgaatcctatgatttggtaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtc |
25971552 |
T |
|
| Q |
108 |
cactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctga |
207 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25971553 |
cactgcgtcaccgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtctaacacataatcattaacctga |
25971652 |
T |
|
| Q |
208 |
tcaacaattgtattctttggtaccaatat |
236 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
25971653 |
tcaacaattgtattctttggtgccaatat |
25971681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 25975893 - 25976121
Alignment:
| Q |
8 |
tcaataacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtc |
107 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25975893 |
tcaataacatcacaggtactcccactttcaatcgaatcctatgatttggtaattcggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtc |
25975992 |
T |
|
| Q |
108 |
cactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctga |
207 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25975993 |
cactgcgtcaccgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtctaacacataatcattaacctga |
25976092 |
T |
|
| Q |
208 |
tcaacaattgtattctttggtaccaatat |
236 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
25976093 |
tcaacaattgtattctttggtgccaatat |
25976121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 2280627 - 2280412
Alignment:
| Q |
12 |
taacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccact |
111 |
Q |
| |
|
|||||| ||| || |||||||||||| ||| | || ||||||| ||||||| || || |||||||||||||| |||||||| ||||||||||| || ||| |
|
|
| T |
2280627 |
taacatgacaggtgctcctactttcagtcgcaaccgatgatttggcaatccagacgccacaatggtgttgaggaattcaggagtgtggatgtcatctact |
2280528 |
T |
|
| Q |
112 |
gcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctgatcaa |
211 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
2280527 |
gcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatatattttttcttcaccaggaatcaagtctaacacataatcattaacctgttcaa |
2280428 |
T |
|
| Q |
212 |
caattgtattctttgg |
227 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
2280427 |
caatggtattctttgg |
2280412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 18255932 - 18255704
Alignment:
| Q |
8 |
tcaataacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtc |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18255932 |
tcaataacatcacaggtactcctactttcaatcgaatcctatgatttggtaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtc |
18255833 |
T |
|
| Q |
108 |
cactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctga |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18255832 |
cactgcgtcaccgcctaggtttttatgataagatgtatcataactcaaataaattttttcctcaccaggaatcaagtctaacacataatcattaacctga |
18255733 |
T |
|
| Q |
208 |
tcaacaattgtattctttggtaccaatat |
236 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
18255732 |
tcaacaattgtattctttggtgccaatat |
18255704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 38656340 - 38656564
Alignment:
| Q |
12 |
taacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccact |
111 |
Q |
| |
|
|||||| ||| || |||||||||||| ||| | || ||||||| | |||||||| || |||||||||||||| |||||||| ||||||||||| || || |
|
|
| T |
38656340 |
taacatgacaggtgctcctactttcagtcgcaaccgatgatttggaaatccggacgccacaatggtgttgaggaattcaggagtgtggatgtcatctacg |
38656439 |
T |
|
| Q |
112 |
gcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctgatcaa |
211 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
38656440 |
gcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatagattttttcttcaccaggaatcaagttgaacacataatcattaacctgttcaa |
38656539 |
T |
|
| Q |
212 |
caattgtattctttggtaccaatat |
236 |
Q |
| |
|
|||| ||||||||||| ||||||| |
|
|
| T |
38656540 |
caatggtattctttggcgccaatat |
38656564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 52419211 - 52419427
Alignment:
| Q |
12 |
taacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccact |
111 |
Q |
| |
|
|||||| ||| || ||| |||||||| ||| | || ||||||| |||||||||| || |||||||||||||| |||||||| ||||||||||| || | | |
|
|
| T |
52419211 |
taacatgacaggtgctcatactttcagtcgcaaccgatgatttggcaatccggacgccacaatggtgttgaggaattcaggagtgtggatgtcatctaat |
52419310 |
T |
|
| Q |
112 |
gcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctgatcaa |
211 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| || |||| |
|
|
| T |
52419311 |
gcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatagattttttcttcaccaggaatcaagtctaacacataatcattaacgtgttcaa |
52419410 |
T |
|
| Q |
212 |
caattgtattctttggt |
228 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
52419411 |
caatggtattctttggt |
52419427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 31486919 - 31486704
Alignment:
| Q |
12 |
taacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccact |
111 |
Q |
| |
|
|||||| ||| || |||||||||||| ||| | || ||||||| ||||||| || | |||||||||||||| |||||||| ||||||||||| || ||| |
|
|
| T |
31486919 |
taacatgacacgtgctcctactttcagtcgcaaccgatgatttggcaatccagacaccacaatggtgttgaggaattcaggagtgtggatgtcatctact |
31486820 |
T |
|
| Q |
112 |
gcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctgatcaa |
211 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||| ||||| |||||||| |||||| ||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
31486819 |
gcgtcaccatctatgtttttatgataaggtgtatcgtaacttaaatagattttttcttcaccatgaatcaagtctaacacataatcattaacctgttcaa |
31486720 |
T |
|
| Q |
212 |
caattgtattctttgg |
227 |
Q |
| |
|
| || ||||||||||| |
|
|
| T |
31486719 |
cgatggtattctttgg |
31486704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 37891948 - 37892176
Alignment:
| Q |
8 |
tcaataacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtc |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37891948 |
tcaataacatcacaggtactcctactttcaatcgaatcctatgatttggtaatccggaggcaacaatggtgttgagaaattcaggggtgtggatgtcgtc |
37892047 |
T |
|
| Q |
108 |
cactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctga |
207 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37892048 |
cactgcgtcaccgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtctaacacataatcattaacctga |
37892147 |
T |
|
| Q |
208 |
tcaacaattgtattctttggtaccaatat |
236 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
37892148 |
tcaacaattgtattctttggtgccaatat |
37892176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 23089681 - 23089917
Alignment:
| Q |
1 |
atggtcatcaataacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtgga |
100 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||| ||||||||||||| ||||||| || ||||||||||||| |||||||||||||||||||| |
|
|
| T |
23089681 |
atggtcctcaataacatcacaggtactcctactttcaatctaatcctatgatttggcaatccagacgcaacaatggtgtagagaaattcaggcgtgtgga |
23089780 |
T |
|
| Q |
101 |
tgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactc-aaataaattttttcctcaccaggaatcaagtttaacacataatcat |
199 |
Q |
| |
|
|||||||||| ||||||| | | ||||||||| |||| ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23089781 |
tgtcgtccaccgcgtcaccgtccaggtttttacgatatggtgtatcataactcaaaataatttttttcctcaccaggaatcaagtctaacacataatcat |
23089880 |
T |
|
| Q |
200 |
taacctgatcaacaattgtattctttggtaccaatat |
236 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23089881 |
taacctgatcaacaattgtattctttggtgccaatat |
23089917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 29245136 - 29244912
Alignment:
| Q |
12 |
taacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccact |
111 |
Q |
| |
|
|||||| ||| || |||||||||||| || | || ||||||| |||||||||| || |||||||||||||| |||||||| ||||||||||| || ||| |
|
|
| T |
29245136 |
taacatgacacgtgctcctactttcagtcacaaccgatgatttggcaatccggacgccacaatggtgttgaggaattcaggagtgtggatgtcatctact |
29245037 |
T |
|
| Q |
112 |
gcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctgatcaa |
211 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| || |||| |
|
|
| T |
29245036 |
gcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatagattttttcttcaccaggaatcaagtctaacacataatcattaacgtgttcaa |
29244937 |
T |
|
| Q |
212 |
caattgtattctttggtaccaatat |
236 |
Q |
| |
|
|||| ||||||||||| ||||||| |
|
|
| T |
29244936 |
caataatattctttggttccaatat |
29244912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 48650700 - 48650485
Alignment:
| Q |
12 |
taacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccact |
111 |
Q |
| |
|
|||||| ||| || |||||||||||| ||| | || ||||||| ||||||| || | |||||||||||||| |||||||| ||||||||||| || ||| |
|
|
| T |
48650700 |
taacatgacaggtgctcctactttcagtcgcaaccgatgatttggcaatccagactccacaatggtgttgaggaattcaggagtgtggatgtcatctact |
48650601 |
T |
|
| Q |
112 |
gcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctgatcaa |
211 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
48650600 |
gcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatatattttttcttcaccaggaatcaagtctaacacataatcattaacctgttcaa |
48650501 |
T |
|
| Q |
212 |
caattgtattctttgg |
227 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
48650500 |
caatggtattctttgg |
48650485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 13926715 - 13926881
Alignment:
| Q |
12 |
taacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccact |
111 |
Q |
| |
|
|||||| ||| || |||||||||||| ||| | || ||||||| |||||||||| || |||||||||||||| |||||||| ||||||||||| || ||| |
|
|
| T |
13926715 |
taacatgacaggtgctcctactttcagtcgcaaccgatgatttggcaatccggacgccacaatggtgttgaggaattcaggagtgtggatgtcatctact |
13926814 |
T |
|
| Q |
112 |
gcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaa |
178 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||| || ||||| |||||||||| |
|
|
| T |
13926815 |
gcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatagatattttcttcaccaggaa |
13926881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 36896058 - 36896293
Alignment:
| Q |
1 |
atggtcatcaataacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtgga |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36896058 |
atggtcctcaataacatcacatgtactcctactttcaatcgaatcctatgatttggcaatccggatgcaacaatggtgttgagaaattcaggcgtgtgga |
36896157 |
T |
|
| Q |
101 |
tgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcatt |
200 |
Q |
| |
|
| |||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36896158 |
tatcgtccactgcgtcaccgtctaggtttttacgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcatt |
36896257 |
T |
|
| Q |
201 |
aacctgatcaacaattgtattctttggtaccaatat |
236 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
36896258 |
aacctgatcagcaattgtattctttggtgccaatat |
36896293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 16908747 - 16908532
Alignment:
| Q |
12 |
taacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccact |
111 |
Q |
| |
|
|||||| ||| || |||||||||||| ||| | || ||||||| ||||||| || || |||||||||||||| |||||||| ||||||||||| || ||| |
|
|
| T |
16908747 |
taacatgacaggtgctcctactttcagtcgcaaccgatgatttggcaatccagacgccacaatggtgttgaggaattcaggagtgtggatgtcatctact |
16908648 |
T |
|
| Q |
112 |
gcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctgatcaa |
211 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
16908647 |
gcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatatattttttcttcaccaggaatcaagtctaacacataatcattaacctgttcaa |
16908548 |
T |
|
| Q |
212 |
caattgtattctttgg |
227 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
16908547 |
caatggtattctttgg |
16908532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 28389085 - 28388871
Alignment:
| Q |
12 |
taacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccact |
111 |
Q |
| |
|
|||||| ||| || |||||||||||| ||| | || ||||||| ||||||| || || |||||||||||||| |||||||| |||| |||||| || ||| |
|
|
| T |
28389085 |
taacatgacaggtgctcctactttcagtcgcaaccgatgatttggcaatccagacgccacaatggtgttgaggaattcaggagtgtagatgtcatctact |
28388986 |
T |
|
| Q |
112 |
gcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctgatcaa |
211 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||| | |||||| |||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
28388985 |
gcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatata-tttttcttcaccaggaatcaagtctaacacataatcattaacctgttcaa |
28388887 |
T |
|
| Q |
212 |
caattgtattctttgg |
227 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
28388886 |
caatggtattctttgg |
28388871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 21382332 - 21382117
Alignment:
| Q |
12 |
taacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccact |
111 |
Q |
| |
|
|||||| ||| || |||||||||||| ||| | | ||||||| ||||||| || | |||||||||||||| |||||||| ||||||||||| || ||| |
|
|
| T |
21382332 |
taacatgacacgtgctcctactttcagtcgcaactgatgatttggcaatccagacaccacaatggtgttgaggaattcaggagtgtggatgtcatctact |
21382233 |
T |
|
| Q |
112 |
gcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctgatcaa |
211 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||| ||||| |||||||| |||||| ||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
21382232 |
gcgtcaccatctatgtttttatgataaggtgtatcgtaacttaaatagattttttcttcaccatgaatcaagtctaacacataatcattaacctgttcaa |
21382133 |
T |
|
| Q |
212 |
caattgtattctttgg |
227 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
21382132 |
caatggtattctttgg |
21382117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 29359634 - 29359844
Alignment:
| Q |
26 |
ctcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctag |
125 |
Q |
| |
|
|||||||||||| | | | || ||||||| |||||||||| || |||| ||||||||| |||||||| ||||||||||| || || |||||| ||| |
|
|
| T |
29359634 |
ctcctactttcagttgcaaccgatgatttggcaatccggacgccacaaaggtgttgaggaattcaggagtgtggatgtcatctacaacgtcaccatctat |
29359733 |
T |
|
| Q |
126 |
gtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctgatcaacaattgtattcttt |
225 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
29359734 |
gtttttatgataaggtgtatcgtaactcaaatagattttttcttcaccaggaatcaagtctaacacataatcattaacctgttcaacaatggcattcttt |
29359833 |
T |
|
| Q |
226 |
ggtaccaatat |
236 |
Q |
| |
|
|| ||||||| |
|
|
| T |
29359834 |
ggcgccaatat |
29359844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 38095924 - 38096152
Alignment:
| Q |
8 |
tcaataacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtc |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
38095924 |
tcaataacatcacaggtactcctactttcaatcgaatcctatgatttggtaatccggaggcaacaatggtgttgagaaattcaagcatgtggatgtcgtc |
38096023 |
T |
|
| Q |
108 |
cactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctga |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||| |
|
|
| T |
38096024 |
cactgcgtcaccgcctaggtttttatgataaggtgtatcataactcaaataaattttttccttatcaggagtcaagtccaacacataatcattaacctga |
38096123 |
T |
|
| Q |
208 |
tcaacaattgtattctttggtaccaatat |
236 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
38096124 |
tcaacaattgtattctttggtgccaatat |
38096152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 37609658 - 37609518
Alignment:
| Q |
1 |
atggtcatcaataacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtgga |
100 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37609658 |
atggtcctcaataacatcacaggtactcctactttcaatcgaatcctatgatttggcaatccggacgcaacaatggtgttgagaaattcaggcgtgtgga |
37609559 |
T |
|
| Q |
101 |
tgtcgtccactgcgtcactgcctaggtttttatgataaggt |
141 |
Q |
| |
|
|||||| ||||||||||| | ||||||||| | |||||||| |
|
|
| T |
37609558 |
tgtcgttcactgcgtcaccgtctaggttttcacgataaggt |
37609518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 26168525 - 26168301
Alignment:
| Q |
12 |
taacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccact |
111 |
Q |
| |
|
|||||| ||| || |||||||||||| ||| | || ||||||| | |||||||| || |||||||||||||| |||||||| ||||||||||| || || |
|
|
| T |
26168525 |
taacatgacaggtgctcctactttcagtcgcaaccgatgatttggaaatccggacgccacaatggtgttgaggaattcaggagtgtggatgtcatctacg |
26168426 |
T |
|
| Q |
112 |
gcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctgatcaa |
211 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
26168425 |
gcgtcaccatctatgtttttatgataaggtgtatcataactcaaatagattttttcttcaccaggaatcaagttgaacacataatcattaacctgttcaa |
26168326 |
T |
|
| Q |
212 |
caattgtattctttggtaccaatat |
236 |
Q |
| |
|
|||| ||||||||||| ||||||| |
|
|
| T |
26168325 |
caatggtattctttggcgccaatat |
26168301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 45115511 - 45115295
Alignment:
| Q |
12 |
taacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccact |
111 |
Q |
| |
|
|||||| ||| || |||||||||||| ||| | || ||||||| ||||||| || || |||||||||||||| |||||| | ||||||||||| || ||| |
|
|
| T |
45115511 |
taacatgacaggtgctcctactttcagtcgcaaccgatgatttggcaatccagacgccacaatggtgttgaggaattcaagagtgtggatgtcatctact |
45115412 |
T |
|
| Q |
112 |
gcgtcactgcctaggtttttatgataaggtgtatcataactcaaata-aattttttcctcaccaggaatcaagtttaacacataatcattaacctgatca |
210 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
45115411 |
gcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatatatttttttcttcaccaggaatcaagtctaacacataatcattaacctgttca |
45115312 |
T |
|
| Q |
211 |
acaattgtattctttgg |
227 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
45115311 |
acgatggtattctttgg |
45115295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 23827450 - 23827235
Alignment:
| Q |
12 |
taacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccact |
111 |
Q |
| |
|
|||||| ||| || |||||||||||| ||| | || ||||||| ||||||| || || |||||||||||||| |||||||| ||||||||||| || ||| |
|
|
| T |
23827450 |
taacatgacaggtgctcctactttcagtcgcaaccgatgatttggcaatccagacgccacaatggtgttgaggaattcaggagtgtggatgtcatctact |
23827351 |
T |
|
| Q |
112 |
gcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctgatcaa |
211 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
23827350 |
gcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatatattttttcttcaccaggaatcaagtctaacacataatcattaacctgttcaa |
23827251 |
T |
|
| Q |
212 |
caattgtattctttgg |
227 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
23827250 |
caatggtattctttgg |
23827235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 19961310 - 19961094
Alignment:
| Q |
12 |
taacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccact |
111 |
Q |
| |
|
|||||| ||| || |||||||||||| ||| | || ||||||| ||||||| || || |||||||||||||| |||||||| ||||||||||| || ||| |
|
|
| T |
19961310 |
taacatgacaggtgctcctactttcagtcgcaaccgatgatttggcaatccagacgccacaatggtgttgaggaattcaggagtgtggatgtcatctact |
19961211 |
T |
|
| Q |
112 |
gcgtcactgcctaggtttttatgataaggtgtatcataactcaaata-aattttttcctcaccaggaatcaagtttaacacataatcattaacctgatca |
210 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
19961210 |
gcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatatatttttttcttcaccaggaatcaagtctaacacataatcattaacctgttca |
19961111 |
T |
|
| Q |
211 |
acaattgtattctttgg |
227 |
Q |
| |
|
| ||| ||||||||||| |
|
|
| T |
19961110 |
ataatggtattctttgg |
19961094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 1512455 - 1512231
Alignment:
| Q |
12 |
taacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccact |
111 |
Q |
| |
|
|||||| ||| || |||||||||||| ||| | || ||||||| | |||||||| || |||||||||||||| |||||||| || |||||||| || || |
|
|
| T |
1512455 |
taacatgacaggtgctcctactttcagtcgcaaccgatgatttggaaatccggacgccacaatggtgttgaggaattcaggagtatggatgtcatctacg |
1512356 |
T |
|
| Q |
112 |
gcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctgatcaa |
211 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
1512355 |
gcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatagattttttcttcaccaggaatcaagttgaacacataatcattaacctgttcaa |
1512256 |
T |
|
| Q |
212 |
caattgtattctttggtaccaatat |
236 |
Q |
| |
|
|||| ||||||||||| ||||||| |
|
|
| T |
1512255 |
caatggtattctttggcgccaatat |
1512231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 5013985 - 5014209
Alignment:
| Q |
12 |
taacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccact |
111 |
Q |
| |
|
|||||| ||| || |||||||||||| ||| | || ||||||| ||||| ||| || |||||||||||||| |||||||| ||||||||||| || || |
|
|
| T |
5013985 |
taacatgacaggtgctcctactttcagtcgcaaccgatgatttggcaatttggacgccacaatggtgttgaggaattcaggagtgtggatgtcatctacg |
5014084 |
T |
|
| Q |
112 |
gcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctgatcaa |
211 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
5014085 |
gcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatagattttttcttcaccaggaatcaagtctaacacataatcattaacctgttcaa |
5014184 |
T |
|
| Q |
212 |
caattgtattctttggtaccaatat |
236 |
Q |
| |
|
|||| ||||||||||| ||||||| |
|
|
| T |
5014185 |
caatggtattctttggcgccaatat |
5014209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 4997945 - 4998133
Alignment:
| Q |
48 |
atgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatca |
147 |
Q |
| |
|
||||||| ||||| ||| || |||||||||||||| |||||||| ||||||||||| || || ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
4997945 |
atgatttggcaatttggacgccacaatggtgttgaggaattcaggagtgtggatgtcatctacggcgtcaccatctatgtttttatgataaggtgtatcg |
4998044 |
T |
|
| Q |
148 |
taactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttggtaccaatat |
236 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
4998045 |
taactcaaatagattttttcttcaccaggaatcaagtctaacacataatcattaacctgttcaacaatggtattctttggcgccaatat |
4998133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 52334 - 52549
Alignment:
| Q |
12 |
taacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtggatgtcgtccact |
111 |
Q |
| |
|
|||||| ||| || |||||||||||| ||| | || ||||||| ||||||| || | |||||||||||||| |||||| | ||||||||||| || ||| |
|
|
| T |
52334 |
taacatgacacgtgctcctactttcagtcgcaaccgatgatttggcaatccagacaccacaatggtgttgaggaattcaagagtgtggatgtcatctact |
52433 |
T |
|
| Q |
112 |
gcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcaccaggaatcaagtttaacacataatcattaacctgatcaa |
211 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
52434 |
gcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatagattttttcttcaccaggaatcaagtctaacacataatcattaacctgttcaa |
52533 |
T |
|
| Q |
212 |
caattgtattctttgg |
227 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
52534 |
caatggtattctttgg |
52549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1910 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold1910
Description:
Target: scaffold1910; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 1052 - 1171
Alignment:
| Q |
1 |
atggtcatcaataacatcacatgtactcctactttcaatcgaatcctatgattttgcaatccggaggcaacaatggtgttgagaaattcaggcgtgtgga |
100 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1052 |
atggtcctcaataacatcacaagtactcctactttcaatcgaatcctatgattttacaatccggaggcaacaatggtgttgagaaattcaggcgtgtgga |
1151 |
T |
|
| Q |
101 |
tgtcgtccactgcgtcactg |
120 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
1152 |
tatcgtccactgcgtcactg |
1171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University