View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20001_low_5 (Length: 602)
Name: NF20001_low_5
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 18 - 593
Target Start/End: Original strand, 45549199 - 45549774
Alignment:
| Q |
18 |
gtttcacacccattctgttttcctgaactcctgtgatattaaacaaactaggtaaaatctagaactcaagttgtttccattcatccatgtttagttagtt |
117 |
Q |
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| T |
45549199 |
gtttcacacccattctgccttcctgaactcctgtgatattaaacaaactaggtaaaatctagaactcaagttgtttccattcatccatgtttagttagtt |
45549298 |
T |
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| Q |
118 |
atactcaccaattgtttttcttttatggtatgcaacttcactggtcttgaatccctcatgtgctgcctcaggaacagcttgatcttgcaaattggttcct |
217 |
Q |
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| T |
45549299 |
atactcaccaattgtttttcttttatggtatgcaacttcactggtcttgaatccctcatgtgctgcctcaggaacagcttgatcttgcaaattggttcct |
45549398 |
T |
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| Q |
218 |
atcggttgcacagcttggtattgctataaataaaattaagttcaacaacaaagggttatatattttagttcgtgaaagacatatcatgtaactgttagat |
317 |
Q |
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| T |
45549399 |
atcggttgcacagcttggtattgctataaatcaaattaagttcaacaacaaagggttatatattttagttcgtgaaagacatatcatgtaactgttagat |
45549498 |
T |
|
| Q |
318 |
ttatattatgtaatttatgttcatatgacataaattggcggttttagatcctactcagtcagtgcttaccaaatcattggccgattcttgtaaatcttca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45549499 |
ttatattatgtaatttatgttcatatgacataaattggcggttttagatcctactcagtcagtgcttaccaaatcattggccgattcttgtaaatcttca |
45549598 |
T |
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| Q |
418 |
ctcttgccagcattgtacaacgtagaagtaggaagcagttcatgttctgtgaatatgctaaaccttttttggtctgctccatttaagacattcaattttc |
517 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45549599 |
ctcttgccagaattgtacaacgtagaagtaggaagcagttcatgttctgtgaatatgctaaaccttttttggtctgctccatttaagacattcaattttc |
45549698 |
T |
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| Q |
518 |
cagatgctctaccactagcttcttgttcatttcttctactcaacatttgttcaatcttttcaggctttattttctt |
593 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45549699 |
cagatgctctaccactagcttcttgttcatttcttctactcaacatttgttcaatcttttcaggctttattttctt |
45549774 |
T |
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