View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20001_low_8 (Length: 522)
Name: NF20001_low_8
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 158 - 513
Target Start/End: Complemental strand, 2251896 - 2251541
Alignment:
| Q |
158 |
catatgtttgaaccaaaacaaatcaacctatttttcattgatttaatttaaatctcataagataattacaaaaattgaatcaaaacaattatttttaatt |
257 |
Q |
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| T |
2251896 |
catatgtttgaaccaaaacaaatcaacctatttttcattgatttaatttaaatctcataagataattacaaaaatcgaatcaaaacaattatttttaatt |
2251797 |
T |
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| Q |
258 |
gttgatgttttctttttaaatcgaaccaaaccgagacgaagagtannnnnnnnnnnnnnngtttggtttaagcattttgagggttgtttggtttatatat |
357 |
Q |
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| T |
2251796 |
gttgatgttttctttttaaatcaaaccaaaccgagacgaagagtatttttaattttttttgtttggtttaagcattttgagggttgtttggtttatatat |
2251697 |
T |
|
| Q |
358 |
gaaaagtattttattcctaattttgaagcttgtgaaacacaatagaaatagaaaagaccaagtcacataaaacattggtttttggctccaatcacgtggt |
457 |
Q |
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| T |
2251696 |
gaaaagtattttattcctaattttgaagcttgtgaaacacaatagaaatagaaaagaccaagtcacataaaacattggtttttggctccaatcacgtggt |
2251597 |
T |
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| Q |
458 |
cggttaccccttgtttgattctatttctccatccatctttccgttctctgctgctc |
513 |
Q |
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| T |
2251596 |
cagttaccccttgtttgattctatttctccatccatctttccgttctttgctgctc |
2251541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 2252053 - 2251960
Alignment:
| Q |
1 |
atcaaatgtggtattttataccgtataattaaatttaacagacccgaaattatccttatacagtatatgattcatccttccaagtttattatcc |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2252053 |
atcaaatgtggtattttataccgtataattaaatttaacagacccgaaattatccttatagagtatatgattcatccttccaagtttattatcc |
2251960 |
T |
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