View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20002_high_14 (Length: 318)
Name: NF20002_high_14
Description: NF20002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20002_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 26384214 - 26383926
Alignment:
| Q |
11 |
cacagaagagacaagaaaaagaagcatcactttttagaaatgactaataacaaataagcattatggttagtcaatttatnnnnnnnnn--gtcaacccaa |
108 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
26384214 |
cacaaaagagacaagaaaaagaagcatcaatttttagaaatgactaataacaaataaggattatggttagtcaatttataaaaaaaaaaagtcaacccaa |
26384115 |
T |
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| Q |
109 |
ctttctcataaattgatcacttattgaaaaatgcttcaacttaataaaatatagactaatgctagagtgtgttgaagaggggttgagactctccagtttt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26384114 |
ctttctcataaattgatcacttattgaaaaatgcttcaacttaataaaatatagactaatgctagagtgtgttgaagaggggttgagactctccagtttt |
26384015 |
T |
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| Q |
209 |
attaatcatttaaagtatgtgtctacctctcttctattgaatccagagagaatctcaactcgttatagagtatgtcaaaaagagtgaat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26384014 |
attaatcatttaaagtatgtgtctacctctcttctattgaatccggagagaatctcaactcgttatagagtatgtcaaaaagagtgaat |
26383926 |
T |
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