View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20002_high_15 (Length: 301)
Name: NF20002_high_15
Description: NF20002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20002_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 6234087 - 6233794
Alignment:
| Q |
1 |
gtggatgttgacaaggaagagtggaagctagagacactatgcgacatcttcgagctgaccctgaaagct---aaatccatcactcattgtatcgtctttg |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
6234087 |
gtggatgttgacaaggaagagtggaagctagagacactatgcgacatctttgagctgacccttaaagcttataaatccatcactcattgtatcgtctttg |
6233988 |
T |
|
| Q |
98 |
tgaacactatcgacaaagtggactggctcacggacaagatgcgaagcagagatcattatgtcattcatggtgacagggaccagaacactatggataccat |
197 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6233987 |
tgaatactatcgacaaagtggactggctcacggacaagatgcgaagcagagatcattatgtcattcatggtgacagggaccagaacactatggataccat |
6233888 |
T |
|
| Q |
198 |
tgaaggtgagtttcttttcgagtctggctctcctcaagttctcattaccaccgaccccctcgtttgtggtacagatttgcataaagcgtctctg |
291 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6233887 |
tgaacgtgagtttcttttcgagtctggctctcctcaagttctcattaccaccgaccccctcgtttgtggtacagatttgcataaagcgtctctg |
6233794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 6226832 - 6226680
Alignment:
| Q |
1 |
gtggatgttgacaaggaagagtggaagctagagacactatgcgacatcttcgagctgaccctgaaagctaaatccatcactcattgtatcgtctttgtga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6226832 |
gtggatgttgacaaggaagagtggaagctagagacactatgtgacatatttgagctgacccttaaagctaaatccatcactcattgtatcgtctttgtga |
6226733 |
T |
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| Q |
101 |
acactatcgacaaagtggactggctcacggacaagatgcgaagcagagatcat |
153 |
Q |
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| || || ||||||||||||||||||| |||| || ||||||||||||||||| |
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| T |
6226732 |
ataccatggacaaagtggactggctcatggacgagttgcgaagcagagatcat |
6226680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 205 - 291
Target Start/End: Complemental strand, 6226622 - 6226536
Alignment:
| Q |
205 |
gagtttcttttcgagtctggctctcctcaagttctcattaccaccgaccccctcgtttgtggtacagatttgcataaagcgtctctg |
291 |
Q |
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|||||| ||| | ||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |
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| T |
6226622 |
gagtttttttcccagtctagctctcctcaagttctcattaccaccgacccccagctttgtggtgcagatgtgcataaagcgtctctg |
6226536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 6249475 - 6249434
Alignment:
| Q |
112 |
aaagtggactggctcacggacaagatgcgaagcagagatcat |
153 |
Q |
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| T |
6249475 |
aaagtggactggcttacggataagatgcgaagcagagatcat |
6249434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 6241072 - 6241036
Alignment:
| Q |
111 |
caaagtggactggctcacggacaagatgcgaagcaga |
147 |
Q |
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| T |
6241072 |
caaagtggactggctcatggacaaaatgcgaagcaga |
6241036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 283
Target Start/End: Original strand, 17545287 - 17545572
Alignment:
| Q |
4 |
gatgttgacaaggaagagtggaagctagagacactatgcgacatcttcgagctgaccctgaaagctaaatccatcactcattgtatcgtctttgtgaaca |
103 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||||| ||||||||| | | |
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| T |
17545287 |
gatgttgagaaggaagagtggaagctagagacactatgcgacatctttgagctgaccgttaaagctaaatcgatcactcattgtattgtctttgtggata |
17545386 |
T |
|
| Q |
104 |
ctatcgacaaagtggactggctcacggacaagatgcgaagcagagatcatta--tgtcattcat----ggtgacagggaccagaacactatggataccat |
197 |
Q |
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| | ||||||||| ||||||||||||||||||| ||||||||||||| | ||||| |||| |||||| |||||||||||||| ||||| ||| |
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| T |
17545387 |
ccaggtgcaaagtggattggctcacggacaagatgcaaagcagagatcataaagtgtcagtcatccagagtgacatggaccagaacactagggatatcat |
17545486 |
T |
|
| Q |
198 |
tgaaggtgagtttcttttcgagtctggctctcctcaagttctcattaccaccgaccccctcgtttgtggtacagatttgcataaag |
283 |
Q |
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|| | ||||| ||| | |||||||||||||||| |||||||||||||| |||||| | ||||||||||||||| ||||||||| |
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| T |
17545487 |
tgtgcgcgagttcttttcccagtctggctctcctcatgttctcattaccacagaccccttggtttgtggtacagatgtgcataaag |
17545572 |
T |
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