View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20002_high_16 (Length: 291)
Name: NF20002_high_16
Description: NF20002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20002_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 40569254 - 40568990
Alignment:
| Q |
5 |
ggtagataattctaaagctttttagaagacttcttgccaaggataataacgtgcttctcttatttattttttaaggtcaacttttaaactaaattatata |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40569254 |
ggtagatacttctaaagctttttagaagacttcttgccaaggataataacgtgcttctcttatttattttttaaggtcaacttttaaactaaattatata |
40569155 |
T |
|
| Q |
105 |
tgcagtttttgaaaaattagtcatataccgactgtttcagtagttttgtggcgacaaatttacgtacttaaatatgtgctcttatgcatagtgtgtttgc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
40569154 |
tgcagtttttgaaaaattagtcatataccgactgtttcagtagttttgtggtgacaaatttacgtgcttaaatatgtgctctt---catagtgtgtttgc |
40569058 |
T |
|
| Q |
205 |
attcatgtcttgtttactaattctattcagcagcaggcatacatatcattaattatggatgacttgca |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
40569057 |
attcatgtcttgtttactaattctattcagcagcaggcatacatatcactaattgtggatgacttgca |
40568990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 40552004 - 40551933
Alignment:
| Q |
86 |
ttttaaactaaattata--tatgcagtttttgaaaaattagtcatataccgactgtttcagtagttttgtgg |
155 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| |||||||| || ||||||||||||| ||||| |
|
|
| T |
40552004 |
ttttaaactaaattatacgtgtgcagtttttgaaaaattaatcatatacggattgtttcagtagttctgtgg |
40551933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 40551888 - 40551777
Alignment:
| Q |
154 |
ggcgacaaatttacgtacttaaatatgtgctcttatgcatagtgtgtttgcattcatgtc-ttgtttactaattctattcagcagcaggcatacatatca |
252 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||||||||||| || || |||||||| || ||||||| |||||||| | |||||||||||| |||| |
|
|
| T |
40551888 |
ggcgacaaatttacatacttaaatctgtactcttatgcatggttatttcgcattcatatctttgtttatgtattctatttattagcaggcatacaaatca |
40551789 |
T |
|
| Q |
253 |
ttaattatggat |
264 |
Q |
| |
|
||| ||||||| |
|
|
| T |
40551788 |
ctaaatatggat |
40551777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University