View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20002_high_2 (Length: 674)

Name: NF20002_high_2
Description: NF20002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20002_high_2
NF20002_high_2
[»] chr4 (1 HSPs)
chr4 (1-654)||(22438658-22439315)


Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 654
Target Start/End: Complemental strand, 22439315 - 22438658
Alignment:
Q  1 tagtatatatgtatgcctttggttttactcttgcaagttgaaaggtttaatgtatttatgatatttgtttacagtttatcagcctcttgtttttgctttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  22439315 tagtatatatgtatgcctttggttttactcttgcaagttgaaaggtttaatgtatttattatatttgtttacagtttgtcagcctcttgtttttgctttg 22439216  T
Q  101 aagatactactcactgtatttttgttggaattaagtattaacgtagctttgagaattaggagaaataccttatatttagggtagca-----------tga 189  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||           |||    
T  22439215 aagatactactcactgtatttttgttggaattaagtattaaagtagctttgagaattaggagaaataccttatatttagggtagcaatggatttgtttga 22439116  T
Q  190 ggaagtgttctcccctctcacaaatataactaatcagctatgctatttggacacacgacttccgacatagtatctcgacaccctatactattaagtgtg- 288  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| || |||| |||||||| |||||| ||||||| | ||||||     
T  22439115 ggaagtgttctcccctctcacaagcataactaatcagctatgctatttggacacacgattttcgacgtagtatctggacaccgtatactactgagtgtgt 22439016  T
Q  289 -gttattgaacccgaggtgagagaagaagcaactgatgtgagagagtaaataatatagaactcggaaaccctttaaacatatggtgtctgcttccggaaa 387  Q
     |  || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22439015 ggacatagaacccgaggtgagagaacaagcaactgatgtgagagagtaaataatatagaactcggaaaccctttaaacatatggtgtctgcttccggaaa 22438916  T
Q  388 atatttctcataatatggttgcaatttcagaacaaaccgaacaattttatgtttgtatctttcatgtgtttatagagggaaacagaagagtagattgaaa 487  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22438915 atatttctcataatatggttgcaatttcagaacaaacggaacaattttatgtttgtatctttcatgtgtttatatagggaaacagaagagtagattgaaa 22438816  T
Q  488 gttcctcttaacactctcattttgtgctcacaatcactgtgaaaatatcaaaatactccggatgtgcttggtattttcgcagtgcttgtgagcaaaaatg 587  Q
    ||||||||||||||| ||||||||||||||         ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  22438815 gttcctcttaacactttcattttgtgctca---------tgaaaatatcaaaatactccggaggtgcttggtatttttgcagtgcttgtgaacaaaaatg 22438725  T
Q  588 acagcgagaagagcaattttcaagtagattgacttgggatcctatgggccctcaatgacattgggta 654  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22438724 acagcgagaagagcaattttcaagtagattgacttgggatcctatgggccctcaatgacattgggta 22438658  T

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