View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20002_high_7 (Length: 474)
Name: NF20002_high_7
Description: NF20002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20002_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 7 - 456
Target Start/End: Complemental strand, 34902933 - 34902484
Alignment:
| Q |
7 |
tccaagaatatataggcgtaacaagaccatggaatgaaatgatccaattttctcatttcaaacttccatcatctttctatgacacaattcaaagaatcaa |
106 |
Q |
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| T |
34902933 |
tccaagacaatataggcgtaacaagaccatggaaagaaatgatccaattttctcatttcaaacttccatcatctttctatgacacaattcaaagaatcaa |
34902834 |
T |
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| Q |
107 |
caccaatgccaaacattttcgcgcaaattatgttatcaccatgttgcttactattttccttagcttactagaacaccctatctcattgatcatattaatt |
206 |
Q |
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| T |
34902833 |
caccaatgccaaacattttcgcgcaaattatgttatcaccatgttgcttactattttccttagcttactagaacaccctatctcattgatcatattaatt |
34902734 |
T |
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| Q |
207 |
gtgatgatgattgcatgggtgtatttatatttcctaagagttacacctttggtgatttttgggtatgaaattgatgagagatatgtggttatatctttgt |
306 |
Q |
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| T |
34902733 |
gtgatgatgattgcatgggtgtatttatatttcctaagagttacacctttggtgatttttgggtatgaaattgatgagagatatgtggttatatctttgt |
34902634 |
T |
|
| Q |
307 |
tgtcgatcaccggcggtttgcttgttctaacggatgtaacacataatgtggaagttggtatgtgttttgccctaggtgttgtgttgattcatgctgtgtt |
406 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34902633 |
tgtcgatcaccgccggtttgctcgttctaacggatgtaacacataatgtggaagttggtatgtgttttgccctaggtgttgtgttgattcatgctgtgtt |
34902534 |
T |
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| Q |
407 |
gagagaaacagaagatttgttcacattggatgaagatgtagggattgtaa |
456 |
Q |
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| T |
34902533 |
gagagaaacagaagatttgttcacattggatgaagatgtagggattgtaa |
34902484 |
T |
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