View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20002_low_1 (Length: 820)
Name: NF20002_low_1
Description: NF20002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20002_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 581; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 20 - 812
Target Start/End: Original strand, 2237150 - 2237930
Alignment:
| Q |
20 |
cgtaaaccatagaagggttccattgtcgcgatccaacgcccatgcaaatccacttttctgaacagcaacaacaatatctttcatagttccatttacatgt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
2237150 |
cgtaaaccatagaagggttccattgtcgcgatccaatgcccaagcaaatccacttttctgaacagcaacaacaatatctttctttgttccatttacatgt |
2237249 |
T |
|
| Q |
120 |
gtagttaacatcatcggcgcctctccaaaatctgcatctggtatagaaccttgtggtggacaattagaaattgaagcattgttacatgaaacaaaccata |
219 |
Q |
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| T |
2237250 |
gtagttaacatcattggtgcctctccaaaatctgcatctggtatagaaccttgaggtggacaattagaaattgaagcattgttacatgaaacaaaccata |
2237349 |
T |
|
| Q |
220 |
catcatatcctcctaattgtttgtaccattcgatattaccactgtccaaatcaagggccaagattgaattggaatgattttctggttcaacacacttgtc |
319 |
Q |
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| T |
2237350 |
catcatatcctcctaattgtttgtaccatttgatattaccactgtccaaatcaagggccaagattgaatttgagtgattttctggttcaacacacttgtc |
2237449 |
T |
|
| Q |
320 |
ttgttcaataggagtagtttgattattttgtctttcttgacattcaagtacgttttttggagcagagtagagatttccggtggcaatatagacatgtttt |
419 |
Q |
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| T |
2237450 |
ttgttcaataggagtagtttgattattttgtctttcttgacattcaagtacgttttttggggcagagtagagatttccggtggcaatatagacatgtttt |
2237549 |
T |
|
| Q |
420 |
cgataaacatcaatggaaggactacttccccaaatggcagctccagcatatgctcctatctttccgttgttatccggtaacatatgggttttccataaga |
519 |
Q |
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| T |
2237550 |
cgataaacatcaatggaaggactacttccccaaatggcagctccagcatatgctcctatctttccgttgttatccggtaacatataggttttccataaga |
2237649 |
T |
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| Q |
520 |
tatcgccggtttgagcatcaagttttacaaggcttccacggaatatgcaacaatctttaatggtcgcaccttcttcaagtgaagatgttccaacgtagta |
619 |
Q |
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| T |
2237650 |
tgtcgccggtttgagcatcaagttttacaagacttccacgaaatatgcaacaatctttaatggttgcaccttcttctagtgaagatgttccaacatagta |
2237749 |
T |
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| Q |
620 |
actcctatattttgagagtttagcacaattatacgtcgatataaaagggtcaaaaagtaaaaaggaatgagtgataatccaaaacttgaannnnnnnaag |
719 |
Q |
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| T |
2237750 |
actcctatatattgaaagtttagcataattatactttgatataaacgggtcgaaaagaaagaaggaatgaatgatagccccaaacttga----------- |
2237838 |
T |
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| Q |
720 |
ggagtcctcatacttgtttggtgacgttagagaaattctttcaatgttttatgatactcc-aaaaaatatatattcatcataagtatattcttc |
812 |
Q |
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| T |
2237839 |
-tagtccccatacttgattggtgaggttagataaa-tctttcaatgttttatgatactccaaaaaaataaatattcatcataattattttcttc |
2237930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 213 - 313
Target Start/End: Complemental strand, 2261168 - 2261068
Alignment:
| Q |
213 |
aaccatacatcatatcctcctaattgtttgtaccattcgatattaccactgtccaaatcaagggccaagattgaattggaatgattttctggttcaacac |
312 |
Q |
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||||| ||||||||||| |||||||| | |||||||| || | |||| ||| ||||||||| || ||||||||||| |||||||||||||||||||||| |
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| T |
2261168 |
aaccaaacatcatatccacctaattgatggtaccatttaatttcaccattgtacaaatcaagtgctaagattgaattagaatgattttctggttcaacac |
2261069 |
T |
|
| Q |
313 |
a |
313 |
Q |
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| T |
2261068 |
a |
2261068 |
T |
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