View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20002_low_10 (Length: 378)

Name: NF20002_low_10
Description: NF20002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20002_low_10
NF20002_low_10
[»] chr8 (1 HSPs)
chr8 (1-363)||(4618685-4619047)
[»] chr1 (14 HSPs)
chr1 (2-255)||(45984616-45984861)
chr1 (2-140)||(38138783-38138921)
chr1 (2-363)||(43043995-43044357)
chr1 (214-363)||(7892138-7892290)
chr1 (2-347)||(43067634-43067980)
chr1 (1-82)||(7891874-7891955)
chr1 (1-56)||(50911744-50911799)
chr1 (185-347)||(43082855-43083020)
chr1 (2-80)||(43083123-43083201)
chr1 (222-333)||(3299761-3299875)
chr1 (233-360)||(38139003-38139132)
chr1 (2-80)||(3300013-3300091)
chr1 (9-74)||(40035626-40035691)
chr1 (2-80)||(43077511-43077589)
[»] chr6 (2 HSPs)
chr6 (10-81)||(7530190-7530261)
chr6 (10-80)||(7520653-7520723)
[»] chr2 (3 HSPs)
chr2 (10-74)||(16231466-16231530)
chr2 (7-56)||(34690143-34690192)
chr2 (7-56)||(34712555-34712604)
[»] chr4 (1 HSPs)
chr4 (2-83)||(4230741-4230822)


Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 4619047 - 4618685
Alignment:
Q  1 tcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggtagtatca 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4619047 tcactcggccgttttgctgtcagagacatacgtcgaacagtggctgttggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggtagtatca 4618948  T
Q  101 ctaaatcggcattgcagaagtgaattgtgcaggatgatctaaatttaaatagaaagtgcatcgtcgttattacaataataattagtctttggtcctgagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4618947 ctaaatcggcattgcagaagtgaattgtgcaggatgatctaaatttaaatagaaagtgcatcgtcgttattacaataataattagtctttggtcctgagt 4618848  T
Q  201 atttctataccttgtctagtaaacttgttttgcaggttaagtgtcaagtctgcactgtcatatcagtttttgttcctagaactcggttctagattgactg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4618847 atttctataccttgtctagtaaacttgttttgcaggttaagtgtcaagtctgcactgtcatatcagtttttgttcctagaactcggttctagattgactg 4618748  T
Q  301 tggcagggctatttctttttcgttttatgctttaattattgtgtctaatgtgaacacttggat 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4618747 tggcagggctatttctttttcgttttatgctttaattattgtgtctaatgtgaacacttggat 4618685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 2 - 255
Target Start/End: Original strand, 45984616 - 45984861
Alignment:
Q  2 cactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggtagtatcac 101  Q
    ||||||||||||||| ||||||||||   | || ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||  |||||    
T  45984616 cactcggccgttttgttgtcagagactggcatcaaactgtggctgttggagtcatcaaggctgtgaagaagaaggatcctgctgcaggaggtaaaatcac 45984715  T
Q  102 taaatcggcattgcagaagtgaattgtgcaggatgatctaaatttaaatagaaagtgcatcgtcgttattacaataataattagtctttggtcctgagta 201  Q
    ||| |||  |||| | || |||| |||||| |||||||||    |  |  |||| |  ||||| ||||||||    |||| |||||||||||||| ||||    
T  45984716 taagtcgatattgaaaaaatgaactgtgcaagatgatcta----tctagcgaaa-tctatcgttgttattac---cataaatagtctttggtccttagta 45984807  T
Q  202 tttctataccttgtctagtaaacttgttttgcaggttaagtgtcaagtctgcac 255  Q
    |||||||  ||  ||||||||||||||||||||| |||||||| ||||||||||    
T  45984808 tttctatttctcctctagtaaacttgttttgcagattaagtgtgaagtctgcac 45984861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 38138783 - 38138921
Alignment:
Q  2 cactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggtagtatcac 101  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| | || |||||||||||||||||||  ||||| |||||  ||| |    
T  38138783 cacttggccgttttgctgtcagagacatgcgtcaaactgtggctgttggagtcatcatggttgtgaagaagaaggatcctcatgcagaaggtaagatcgc 38138882  T
Q  102 taaatcggcattgcagaagtgaattgtgcaggatgatct 140  Q
    ||| | ||||||| ||||||||||  |||||||||||||    
T  38138883 taagtaggcattgaagaagtgaatcttgcaggatgatct 38138921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 363
Target Start/End: Complemental strand, 43044357 - 43043995
Alignment:
Q  2 cactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggtagtatcac 101  Q
    ||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||| ||||||||| |||||||||||||  ||| ||||  ||     ||    
T  43044357 cactcggccgttttgctgttagagacatgcgtcaaactgtggctgttggggtcatcaaggctgtggagaagaaggatcccagtggaggacttaagcagac 43044258  T
Q  102 taaatcggcatt---gcagaagtgaattgtgcaggatgatctaaatttaaatagaaagtgcatcgtcgttattacaataataattagtctttggtcctga 198  Q
     || || |||||   | |||||||||  | ||||||||||||  |||||  | | |||   ||| | ||||||||   ||||| | |||||||||||| |    
T  43044257 caagtcagcattgaagaagaagtgaaccgagcaggatgatct--atttacttgggaagcatatcatagttattac---aataaatggtctttggtcctta 43044163  T
Q  199 gtatttctataccttgtctagtaaacttgttttgcaggttaagtgtcaagtctgcactgtcatatc--agtttttgttcctagaactcggttctagattg 296  Q
    ||||||||||  ||  ||||||  ||||||||| ||  |||||||||||||||||||  |||| ||  || || |||||  |||||| |||||||||| |    
T  43044162 gtatttctatttctcttctagtttacttgtttttcatattaagtgtcaagtctgcaccttcatctcttagcttgtgttctcagaactgggttctagatcg 43044063  T
Q  297 actgtggcagggctatttct-ttttcgttttatgctttaattattgtgtctaatgtgaacacttggat 363  Q
    || |||||||  |||| ||| ||||  ||||||||||||||| ||||||||| | |||||||||||||    
T  43044062 acggtggcagtactatatctgttttgtttttatgctttaattgttgtgtctagtctgaacacttggat 43043995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 214 - 363
Target Start/End: Original strand, 7892138 - 7892290
Alignment:
Q  214 gtctagtaaacttgttttgcaggttaagtgtcaagtctgcactgtca--tatcagtttttgttcctagaactcggttctagattgactgtggcagggcta 311  Q
    |||||||||||||| |||| ||||||||||| | |||||||| ||||  || ||| |||||||||||||||| | |||||||| | | |||||||| | |    
T  7892138 gtctagtaaacttgctttgtaggttaagtgtgatgtctgcaccgtcatctagcagcttttgttcctagaactggcttctagatcggcggtggcaggtcca 7892237  T
Q  312 tttctttttcg-ttttatgctttaattattgtgtctaatgtgaacacttggat 363  Q
    ||||||||| | ||||||||| | ||||||||||||| |||||| ||||||||    
T  7892238 tttcttttttgtttttatgctatgattattgtgtctagtgtgaatacttggat 7892290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 347
Target Start/End: Original strand, 43067634 - 43067980
Alignment:
Q  2 cactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggtagtatcac 101  Q
    ||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||| || |||||| |||||||||||||  ||| ||||  ||     ||    
T  43067634 cactcggccgttttgctgttagagacatgcgtcaaactgtggctgttggcgtcatcaaagctgtggagaagaaggatcccagtggaggacttaagcagac 43067733  T
Q  102 taaatcggcatt---gcagaagtgaattgtgcaggatgatctaaatttaaatagaaagtgcatcgtcgttattacaataataattagtctttggtcctga 198  Q
     || || |||||   | |||||||||  | ||||||||||||  || ||  | | |||   ||| | ||||||||   ||||| | |||||||||||| |    
T  43067734 caagtcagcattgaagaagaagtgaaccgagcaggatgatct--atctacttgggaagcatatcatagttattac---aataaatggtctttggtcctta 43067828  T
Q  199 gtatttctataccttgtctagtaaacttgttttgcaggttaagtgtcaagtctgcactgtcatatc--agtttttgttcctagaactcggttctagattg 296  Q
    ||||||||||  || |||||||  ||||||||| ||  |||||||||||||||||||  |||| ||  || ||||||||  |||||| |||||||||| |    
T  43067829 gtatttctatttctagtctagtttacttgtttttcatattaagtgtcaagtctgcaccttcatctcttagcttttgttctcagaactgggttctagatcg 43067928  T
Q  297 actgtggcagggctatttct-ttttcgttttatgctttaattattgtgtcta 347  Q
    || ||||||| ||| | ||| ||||  ||||||||||||||| |||||||||    
T  43067929 acggtggcagcgctctatctgttttatttttatgctttaattgttgtgtcta 43067980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 7891874 - 7891955
Alignment:
Q  1 tcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaaggatcctg 82  Q
    ||||| || |||||||||||||||||||| |||| |||||||||| |||||||||| |||| ||||||||| ||||||||||    
T  7891874 tcacttggtcgttttgctgtcagagacatgcgtcaaactgtggctattggagtcatcaaggatgtgaagaataaggatcctg 7891955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 50911799 - 50911744
Alignment:
Q  1 tcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcat 56  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  50911799 tcactcggccgttttgctgtcagagacatgcgtcaaactgtggctgttggagtcat 50911744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 185 - 347
Target Start/End: Complemental strand, 43083020 - 43082855
Alignment:
Q  185 gtctttggtcctgagtatttctataccttgtctagtaaacttgttttgcaggttaagtgtcaagtctgcactgtcatatc--agtttttgttcctagaac 282  Q
    ||||| |||||| |||||||||||  || |||||||  ||||||||| ||  |||||||||||||||||||  |||| ||  || ||||||||  |||||    
T  43083020 gtcttgggtccttagtatttctatttctcgtctagtttacttgtttttcatattaagtgtcaagtctgcaccttcatctcttagcttttgttctcagaac 43082921  T
Q  283 tcggttctagattgactgtggcagggctatttct-ttttcgttttatgctttaattattgtgtcta 347  Q
    | |||||||||| ||| ||||||| ||| | ||| ||||  ||||||||||||||| |||||||||    
T  43082920 tgggttctagatcgacggtggcagcgctctatctgttttgtttttatgctttaattgttgtgtcta 43082855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 43083201 - 43083123
Alignment:
Q  2 cactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaaggatcc 80  Q
    ||||||| ||||||||||| |||||||| |||| ||||||||||||||| ||||| || |||||| |||||||||||||    
T  43083201 cactcggtcgttttgctgttagagacatgcgtcaaactgtggctgttggcgtcatcaaagctgtggagaagaaggatcc 43083123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 3299875 - 3299761
Alignment:
Q  222 aacttgttttgcaggttaagtgtcaagtctgcactgtcatatc--agtttttgttcctagaactcggttctagattgactgtggcagggctatttctttt 319  Q
    |||||||||| | | ||||||||||||||||||| ||||| ||  |  ||||||||| | |||| |||||| ||| ||| ||||||||||||||||||||    
T  3299875 aacttgtttttcggattaagtgtcaagtctgcaccgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcagggctatttctttt 3299776  T
Q  320 tcgt-tttatgcttt 333  Q
     ||| ||||||||||    
T  3299775 ccgtgtttatgcttt 3299761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 360
Target Start/End: Original strand, 38139003 - 38139132
Alignment:
Q  233 caggttaagtgtcaagtctgcactgtcatat--cagtttttgttcctagaactcggttctagattgactgtggcagggctatttctttttcg-ttttatg 329  Q
    ||||||||||||||||||||||| ||||| |  ||| ||||||||| |||||| | |||||||||||  |||||| |||  ||||||||||| |||||||    
T  38139003 caggttaagtgtcaagtctgcaccgtcatctcacagcttttgttccaagaactggcttctagattgatggtggca-ggccgtttctttttcgtttttatg 38139101  T
Q  330 ctttaattattgtgtctaatgtgaacacttg 360  Q
    || | |||| |||||||  |||||| |||||    
T  38139102 ctatgattactgtgtcttgtgtgaatacttg 38139132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 3300091 - 3300013
Alignment:
Q  2 cactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaaggatcc 80  Q
    |||| |||||||| |||||||| || || ||||  |||||||||||||| ||||| ||||||||| |||||||||||||    
T  3300091 cacttggccgtttcgctgtcagggatatgcgtcagactgtggctgttggtgtcatcaaggctgtggagaagaaggatcc 3300013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 40035626 - 40035691
Alignment:
Q  9 ccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaa 74  Q
    ||||||| | ||||||||||  ||||||||||| |||||||||||||| |||| ||||| ||||||    
T  40035626 ccgttttacagtcagagacacgcgtcgaactgtcgctgttggagtcatcaaggatgtgacgaagaa 40035691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 43077511 - 43077589
Alignment:
Q  2 cactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaaggatcc 80  Q
    |||| ||||||||| || |||| ||||  |||| ||||||||||||||| ||||| | ||||||| || ||||||||||    
T  43077511 cacttggccgttttactatcagggacaagcgtcaaactgtggctgttggtgtcatcacggctgtggagtagaaggatcc 43077589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 7530190 - 7530261
Alignment:
Q  10 cgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaaggatcct 81  Q
    |||||||||||||| ||||| |||| |||||| |||||||| ||||| ||||||||| ||||||||||||||    
T  7530190 cgttttgctgtcagggacatgcgtcaaactgttgctgttggtgtcatcaaggctgtggagaagaaggatcct 7530261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 7520653 - 7520723
Alignment:
Q  10 cgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaaggatcc 80  Q
    |||||||| ||||| ||||| |||| |||||| |||||||| ||||| ||||||||| |||||||||||||    
T  7520653 cgttttgccgtcagggacatgcgtcaaactgttgctgttggtgtcatcaaggctgtggagaagaaggatcc 7520723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 16231530 - 16231466
Alignment:
Q  10 cgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaa 74  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||| | | |||| ||||||||    
T  16231530 cgttttgctgtcagagacatgcgtcaaactgtggctgttggagtcataatgtctgtaaagaagaa 16231466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 34690192 - 34690143
Alignment:
Q  7 ggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcat 56  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| ||||    
T  34690192 ggccgttttgctgtcagagacatgcgtcaaactgtggctgttggaatcat 34690143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 34712604 - 34712555
Alignment:
Q  7 ggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcat 56  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| ||||    
T  34712604 ggccgttttgctgtcagagacatgcgtcaaactgtggctgttggaatcat 34712555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 4230822 - 4230741
Alignment:
Q  2 cactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaaggatcctgg 83  Q
    |||| |||||||||||||||||||| || || | ||||||||||||||| || || |||| |||| |||||||||| |||||    
T  4230822 cacttggccgttttgctgtcagagatatgcggcaaactgtggctgttggggttatcaagggtgtggagaagaaggaacctgg 4230741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University