View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20002_low_11 (Length: 376)
Name: NF20002_low_11
Description: NF20002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20002_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 22439295 - 22439636
Alignment:
| Q |
17 |
caaaggcatacatatatactacaatgaaataaactcttcaaatacaggcttagggtgacattgttactaggccctagagtcctatcaaaatccataaggt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22439295 |
caaaggcatacatatatactacaatgaaataaactctttaaatacaggcttagggtgacattgttactaggccctagagtcctatcaaaatccataaggt |
22439394 |
T |
|
| Q |
117 |
agaaatctgtgcagaataatgcaggcactgttacaaatcttccagttcctaaaatcttaatcgttactgacaacaacaattccattatttcatacaattg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22439395 |
agaaatctgtgcagaataatgcaggcactgttacaaatcttccagttcctaaaatcttaatcgttactgacaacaacaattccattatttcgtacaattg |
22439494 |
T |
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| Q |
217 |
ttatccaatcaaaggaaatattttagattcaaataaatttcagaatcagttctccggttaaacagaaagttgtcgtctacaagtcttctaacaaaaacca |
316 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22439495 |
ttatccaatcaaaggaaatattttagatgcaaataaatttcagaatcagttctccggtggaacagaaagttgtcgtctacaagtcttctaacaaaaacca |
22439594 |
T |
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| Q |
317 |
agaataatgctccttatgctcttttcttgtcatggcgtttat |
358 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22439595 |
agaataatgctccttatgctcttttcttgtcacggcgtttat |
22439636 |
T |
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