View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20002_low_12 (Length: 343)
Name: NF20002_low_12
Description: NF20002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20002_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 10824044 - 10824359
Alignment:
| Q |
1 |
aaatatattttgatcttaattcagtcacttgttagttattgattctatggagatatttgttcctcggttgattcctttgtagttttcttatcttggagat |
100 |
Q |
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| T |
10824044 |
aaatatattttgatcttaattcagtcacttgttagttattgattctatggagatatttgttcctcggttgattcctttgtagttttcttatcttggagat |
10824143 |
T |
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| Q |
101 |
ttatgccnnnnnnnatcttaagccctcatagttatgggatataattgttaaattatatagtatctatatatatttatgttttacaaatctagctatgtct |
200 |
Q |
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| T |
10824144 |
ttatacctttttttatcttaagccctcatagttatgggatataattgttaaattatatagtatc----tatatttatgttttacaaatctagctatgtct |
10824239 |
T |
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| Q |
201 |
cattaaaattggtgttattaatggtctcatgtgatgtagattgaagctatggaaacaagcagatcaaagatcatatacaatctgctatacaaaatcaaga |
300 |
Q |
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| T |
10824240 |
cattacaattggtgttattaat-gtctcatgtgatgtagattgaagctatggaaacaagcagatcaaagatcatatacaatctgctatacaaaatcaaga |
10824338 |
T |
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| Q |
301 |
agacacgtgacatccatacat |
321 |
Q |
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| T |
10824339 |
agacacgtgagatccatacat |
10824359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 313
Target Start/End: Original strand, 10824368 - 10824409
Alignment:
| Q |
272 |
catatacaatctgctatacaaaatcaagaagacacgtgacat |
313 |
Q |
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| T |
10824368 |
catatacaatcttctatacaagatcaagaagacacgtgacat |
10824409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 44658523 - 44658570
Alignment:
| Q |
175 |
tatgttttacaaatctagctatgtctcattaaaattggtgttattaat |
222 |
Q |
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| T |
44658523 |
tatgttttacaaatctagctaggtctcattaaaagtgttgttattaat |
44658570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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