View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20002_low_13 (Length: 343)
Name: NF20002_low_13
Description: NF20002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20002_low_13 |
 | |
|
| [»] scaffold0793 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 720921 - 720605
Alignment:
| Q |
18 |
cctaccatgagcaattgaatgcttagctaaatcaa-nnnnnnnnnnnnagagaaaatcaattgatgatttgctaccaactagaagtctcgtccatctttc |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
720921 |
cctaccatgagcaattgaacgcttagctaaatcaattttttttttttgagagaaaatcaattgatgatttgctaccaactagaagtctcgtccatctttc |
720822 |
T |
|
| Q |
117 |
cttagatttagttcctcctttaacatattgatatcgatgcaaatgcacggtttaacagtcataataaaatatcgatcttaaagatttgtgatcatcggaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
720821 |
cttagatttagttcctcctttaacatattgatatcgatgcaaatgcacggtttaacagtcataataaaatatcgatcttaaagatttgtgatcatcggaa |
720722 |
T |
|
| Q |
217 |
tcattggatttcattgttatgacgaacacaccaactcatattccttccttttgtcttgaaaatacatgactaaagatgatgtattcttatttgtattgtt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
720721 |
tcattggatttcattgttatgacgaacacaccaactcatattccttccttttgtcttgaaaatacatgactaaagatgatgtattcttatttgtattgtt |
720622 |
T |
|
| Q |
317 |
tacttactctatctctg |
333 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
720621 |
tacttactctatctctg |
720605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 65 - 332
Target Start/End: Original strand, 756050 - 756317
Alignment:
| Q |
65 |
agagaaaatcaattgatgatttgctaccaactagaagtctcgtccatctttccttagatttagttcctcctttaacatattgatatcgatgcaaatgcac |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
756050 |
agagaaaatcaattgatgatttgctaccaactagaagtctcgtccatctttccttagatttagtttctcctttaacatattgatatcgatgcaaatgcac |
756149 |
T |
|
| Q |
165 |
ggtttaacagtcataataaaatatcgatcttaaagatttgtgatcatcggaatcattggatttcattgttatgacgaacacaccaactcatattccttcc |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
756150 |
ggtttaacagtcataataaaatatcgatcttaaagatttgtgatcatcggaatcattggatttcattgttatgacgaacacaccaactcatattccttcc |
756249 |
T |
|
| Q |
265 |
ttttgtcttgaaaatacatgactaaagatgatgtattcttatttgtattgtttacttactctatctct |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
756250 |
ttttgtcttgaaaatacatgactaaagatgatgtattcttatttgtattgtttacttactctatctct |
756317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 311
Target Start/End: Complemental strand, 21453559 - 21453461
Alignment:
| Q |
213 |
ggaatcattggatttcattgttatgacgaacacaccaactcatattccttccttttgtcttgaaaatacatgactaaagatgatgtattcttatttgta |
311 |
Q |
| |
|
||||| ||||||||| || ||||||| |||| ||||| ||||||||||| | ||||||| | |||| ||| |||| ||||||||||||| ||||||| |
|
|
| T |
21453559 |
ggaataattggattttgttattatgaccaacaaaccaaatcatattcctttcatttgtctcggaaatgcatagctaaggatgatgtattctcatttgta |
21453461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 756002 - 756036
Alignment:
| Q |
18 |
cctaccatgagcaattgaatgcttagctaaatcaa |
52 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
756002 |
cctaccatgagcaattgaacgcttagctaaatcaa |
756036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0793
Description:
Target: scaffold0793; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 6033 - 6067
Alignment:
| Q |
18 |
cctaccatgagcaattgaatgcttagctaaatcaa |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6033 |
cctaccatgagcaattgaatgcttagctaaatcaa |
6067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 5841987 - 5842039
Alignment:
| Q |
215 |
aatcattggatttcattgttatgacgaacacaccaactcatattccttccttt |
267 |
Q |
| |
|
||||||||||||| || ||||||||||||||| | | |||||||||||||||| |
|
|
| T |
5841987 |
aatcattggatttgatcgttatgacgaacacatccattcatattccttccttt |
5842039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University