View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20002_low_20 (Length: 220)
Name: NF20002_low_20
Description: NF20002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20002_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 52047496 - 52047694
Alignment:
| Q |
1 |
aacctggtgacctgagcaaaaaaccaatcttttttgtaatcactaatgccaacagtgtaaactaggtcttcatttggatacagatcagcatatctctccc |
100 |
Q |
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| T |
52047496 |
aacctggtgacctgagcaaaaaaccaatcttttttgtaatcactaatgccaacagtgtaaactaggtcttcatttggatacagatcagcatatctctccc |
52047595 |
T |
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| Q |
101 |
acaagccatattgcctaaacctgtaaattatataaataggctcataaagtttttccttatattttccaaaaaataaggctcaagtgataatattatttga |
200 |
Q |
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| T |
52047596 |
acaagccatattgcctaaacctgtaaat--tataaataggctcataaagtttttccttatgttttccaaaaaataaggctcaagtgataatattatttga |
52047693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 28206521 - 28206643
Alignment:
| Q |
2 |
acctggtgacctgagcaaaaaaccaatcttttttgtaatcactaatgccaacagtgtaaactaggtcttcatttggatacagatcagcatatctctccca |
101 |
Q |
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| T |
28206521 |
acctggtgacttgtgcatagaaccaatcttttgtgtagtcactaacaccaacattataaatcaaatcttcatttgggtatagctctgcatatctttccca |
28206620 |
T |
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| Q |
102 |
caagccatattgcctaaacctgt |
124 |
Q |
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| T |
28206621 |
caagccatactgcctaaacctgt |
28206643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 28386737 - 28386662
Alignment:
| Q |
52 |
acagtgtaaactaggtcttcatttggatacagatcagcatatctctcccacaagccatattgcctaaacctgtaaa |
127 |
Q |
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| T |
28386737 |
acagtgtaaataagatcatcatttggatacatatcagtgtaacgttcccacaacccatattgcctaaacctgtaaa |
28386662 |
T |
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