View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20002_low_3 (Length: 535)

Name: NF20002_low_3
Description: NF20002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20002_low_3
NF20002_low_3
[»] chr8 (21 HSPs)
chr8 (111-517)||(25489141-25489547)
chr8 (111-273)||(25646202-25646369)
chr8 (146-273)||(24913783-24913915)
chr8 (111-238)||(25603826-25603951)
chr8 (375-517)||(25385270-25385413)
chr8 (111-210)||(25799544-25799640)
chr8 (111-173)||(25694637-25694699)
chr8 (15-68)||(25489590-25489643)
chr8 (431-491)||(25321366-25321426)
chr8 (344-517)||(25603215-25603397)
chr8 (111-184)||(25321934-25322004)
chr8 (15-68)||(25694742-25694795)
chr8 (171-260)||(25569119-25569208)
chr8 (15-68)||(25646412-25646465)
chr8 (20-68)||(24913658-24913706)
chr8 (15-68)||(25322047-25322098)
chr8 (15-68)||(25604000-25604053)
chr8 (196-244)||(25321889-25321937)
chr8 (474-517)||(25799504-25799547)
chr8 (15-52)||(25799658-25799695)
chr8 (272-300)||(25385414-25385442)
[»] scaffold0070 (4 HSPs)
scaffold0070 (146-273)||(17826-17951)
scaffold0070 (431-513)||(18458-18539)
scaffold0070 (23-68)||(17704-17749)
scaffold0070 (272-300)||(18361-18389)
[»] scaffold0526 (1 HSPs)
scaffold0526 (225-270)||(11146-11191)
[»] chr3 (1 HSPs)
chr3 (225-270)||(11971234-11971279)


Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 111 - 517
Target Start/End: Complemental strand, 25489547 - 25489141
Alignment:
Q  111 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25489547 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactttctaatcagtttttg 25489448  T
Q  211 attgaatatttctgtcttttatgtcatatcaggtggtgtctacttactaggttgctacataatcttgtgtcaaaagtacaaaaatatattgtttgcccga 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25489447 attgaatatttctgtcttttatgtcatatcaggtggtgtctacttactaggttgctacataatcttgtgtcaaaagtacaaaaatatattgtttgcacga 25489348  T
Q  311 aatcaacaagcaaaaaagatgtttnnnnnnnnncaattgcttccagtaattaaactctttgatgatatatcatgaatagttgttgctgcttttgtctctt 410  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25489347 aatcaacaagcaaaaaagatgtttaaaaaaaaacaattgcttccagtaattaaactatttgatgatatatcatgaatagttgttgctgcttttgtctctt 25489248  T
Q  411 gacatcttttacaaaaattcacaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagtttctacataattgctggtttt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489247 gacatcttttacaaaaattcacaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagtttctacataattgctggtttt 25489148  T
Q  511 tcagttt 517  Q
    |||||||    
T  25489147 tcagttt 25489141  T

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Target: chr8; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 111 - 273
Target Start/End: Complemental strand, 25646369 - 25646202
Alignment:
Q  111 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||     
T  25646369 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaaaagatcttctattactgaaccttctaatcagttttta 25646270  T
Q  211 attgaatatttctgtcttttatgtcatatcaggtggtg-----tctacttactaggttgctacataat 273  Q
     ||||||||||||||||||||||| ||| |||||||||     |||||||||||||||||||||||||    
T  25646269 gttgaatatttctgtcttttatgttatagcaggtggtgtctagtctacttactaggttgctacataat 25646202  T

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Target: chr8; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 146 - 273
Target Start/End: Original strand, 24913783 - 24913915
Alignment:
Q  146 ttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggtg 245  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  24913783 ttgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttctaatcagtttttggttgaatatttctgtcttttatgttatagcaggtg 24913882  T
Q  246 gt-----gtctacttactaggttgctacataat 273  Q
    ||     ||||||||||||||||||||||||||    
T  24913883 gtgtctagtctacttactaggttgctacataat 24913915  T

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Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 111 - 238
Target Start/End: Complemental strand, 25603951 - 25603826
Alignment:
Q  111 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagt-tttt 209  Q
    ||||||||||||||||||||   ||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||||||||| ||||    
T  25603951 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtacgaatgggaagaaaagatcttatattactgaactttctaatcagtttttt 25603855  T
Q  210 gattgaatatttctgtcttttatgtcata 238  Q
    | ||||||||||||| ||||| |||||||    
T  25603854 ggttgaatatttctgccttttttgtcata 25603826  T

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Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 375 - 517
Target Start/End: Complemental strand, 25385413 - 25385270
Alignment:
Q  375 atatatcatgaatagttgttgctgcttttgtctcttgaca--tcttttacaaaaattcacaaataaaaagtaaatttcaaatgcatgttggtccattcac 472  Q
    |||||||||| || ||||||||||| |||||||| ||| |  | ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  25385413 atatatcatgcattgttgttgctgcctttgtctc-tgaaattttttttacaaaaattcacaaagaaaaactaaatttcaaatgcatggtggtccattcac 25385315  T
Q  473 ctttggacgattctagtttctacataattgctggtttttcagttt 517  Q
    ||||||| |||||| |||| | ||||||| ||| |||| ||||||    
T  25385314 ctttggatgattctggtttttgcataattactgattttacagttt 25385270  T

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Target: chr8; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 25799640 - 25799544
Alignment:
Q  111 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 210  Q
    ||||||||||||||||||||   ||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||    
T  25799640 ggtgcagtctttggaggaga---gtagtgagggtcttgaatcattgtgtaagaatgggaagaaaagatcttctattactgaactttgtaatcagtttttg 25799544  T

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Target: chr8; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 25694699 - 25694637
Alignment:
Q  111 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaa 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25694699 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaa 25694637  T

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Target: chr8; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 25489643 - 25489590
Alignment:
Q  15 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489643 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 25489590  T

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Target: chr8; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 431 - 491
Target Start/End: Complemental strand, 25321426 - 25321366
Alignment:
Q  431 acaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagttt 491  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25321426 acaaataaaaactaaatttcaaatgcatgttggtccattcacctttggatgattctagttt 25321366  T

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Target: chr8; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 344 - 517
Target Start/End: Complemental strand, 25603397 - 25603215
Alignment:
Q  344 caattgcttccagtaattaaactctttgatgatatatcatgaatagttgttgctgcttttgtctcttgacatcttttacaaaaattcacaaataaaa--- 440  Q
    ||||| |||| ||||||||||||||  |||||||||||||| || |||||| | || ||||||||  |||||| ||||||||||||| | ||||||        
T  25603397 caatttcttctagtaattaaactctaagatgatatatcatgcattgttgttccggcctttgtctcc-gacatcgtttacaaaaattcgctaataaatgtc 25603299  T
Q  441 -------agtaaatttcaaatgcatgttggtccattcacctttggacgattctagtttctacataattgctggtttttcagttt 517  Q
           | |||||||  ||||||| |||||||||||||| |||||| |||||||||||| ||||||||| |||||||||||||    
T  25603298 caaattcactaaatttgtaatgcatattggtccattcaccattggactattctagtttctgcataattgcaggtttttcagttt 25603215  T

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Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 25322004 - 25321934
Alignment:
Q  111 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttcta 184  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  25322004 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtaagaatgggaagaaaagatcttcta 25321934  T

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Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 25694795 - 25694742
Alignment:
Q  15 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 68  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25694795 cacagaagcatgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 25694742  T

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Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 25569208 - 25569119
Alignment:
Q  171 gaaaagatcttctattactgaactgtctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggtggtgtctacttactag 260  Q
    ||||||||||||||||||||||||  ||||||| |||||  ||| |||||| | |||| | ||||||| ||||||||||||| |||||||    
T  25569208 gaaaagatcttctattactgaacttgctaatcatttttttgttgcatatttatttcttctctgtcataccaggtggtgtctagttactag 25569119  T

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Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 25646465 - 25646412
Alignment:
Q  15 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 68  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  25646465 cacaaaagcatgtaaatcgtgtgtactatatccatttatgttgtatcccctctc 25646412  T

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Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 24913658 - 24913706
Alignment:
Q  20 aagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 68  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  24913658 aagcatgtaaatcgtgtgtactctatccatttatgttgtatcccctctc 24913706  T

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Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 25322098 - 25322047
Alignment:
Q  15 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 68  Q
    ||||||||||||||||| ||||||| ||||||||||||  ||||||||||||||    
T  25322098 cacagaagcatgtaaattgtgtgtactgtatccattta--ttgtatcccctctc 25322047  T

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Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 25604053 - 25604000
Alignment:
Q  15 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 68  Q
    ||||||||||||||||||||||||| | ||||||| ||| |||||| |||||||    
T  25604053 cacagaagcatgtaaatcgtgtgtactatatccatatatattgtataccctctc 25604000  T

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Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 25321937 - 25321889
Alignment:
Q  196 tctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggt 244  Q
    ||||||||||||||| |||||||| |||| ||||||||||||| |||||    
T  25321937 tctaatcagtttttggttgaatatatctgccttttatgtcatagcaggt 25321889  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 517
Target Start/End: Complemental strand, 25799547 - 25799504
Alignment:
Q  474 tttggacgattctagtttctacataattgctggtttttcagttt 517  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||    
T  25799547 tttggatgattctagtttctgcataattgctgatttttcagttt 25799504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 25799695 - 25799658
Alignment:
Q  15 cacagaagcatgtaaatcgtgtgtattgtatccattta 52  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  25799695 cacagaagcatgtaaatggtgtgtactgtatccattta 25799658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 300
Target Start/End: Complemental strand, 25385442 - 25385414
Alignment:
Q  272 atcttgtgtcaaaagtacaaaaatatatt 300  Q
    |||||||||||||||||||||||||||||    
T  25385442 atcttgtgtcaaaagtacaaaaatatatt 25385414  T

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Target: scaffold0070 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 146 - 273
Target Start/End: Original strand, 17826 - 17951
Alignment:
Q  146 ttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggtg 245  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||||| ||||||||||||||| || | ||||| |||||||||||| ||| ||||||    
T  17826 ttgactcattgtgtaagaatgggaagaaaagat--tctattactgaactttctaatcagtttttggttaattatttttgtcttttatgttatagcaggtg 17923  T
Q  246 gtgtctacttactaggttgctacataat 273  Q
    ||||||||||||||||||||||||||||    
T  17924 gtgtctacttactaggttgctacataat 17951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 431 - 513
Target Start/End: Original strand, 18458 - 18539
Alignment:
Q  431 acaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagtttctacataattgctggtttttca 513  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||| |||||||    
T  18458 acaaagaaaaactaaatttcaaatgcatgttggtccattcacctttggatgattttagttt-tgcataattgctgatttttca 18539  T

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Target: scaffold0070; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 17704 - 17749
Alignment:
Q  23 catgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 68  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  17704 catgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 17749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 300
Target Start/End: Original strand, 18361 - 18389
Alignment:
Q  272 atcttgtgtcaaaagtacaaaaatatatt 300  Q
    |||||||||||||||||||||||||||||    
T  18361 atcttgtgtcaaaagtacaaaaatatatt 18389  T

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Target: scaffold0526 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 11146 - 11191
Alignment:
Q  225 tcttttatgtcatatcaggtggtgtctacttactaggttgctacat 270  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||    
T  11146 tcttttgtgtcataccatgtggtgtctacttactagtttgctacat 11191  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 11971234 - 11971279
Alignment:
Q  225 tcttttatgtcatatcaggtggtgtctacttactaggttgctacat 270  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||    
T  11971234 tcttttgtgtcataccatgtggtgtctacttactagtttgctacat 11971279  T

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