View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20002_low_4 (Length: 524)
Name: NF20002_low_4
Description: NF20002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20002_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 31792437 - 31792942
Alignment:
| Q |
1 |
ttgcagtccttgactgaaacaggaaggtagtgcaaaaagtagtaatcactccaatcaagaatagcccctttctcgacaccaagtctacttccataccctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31792437 |
ttgcagtccttgactgaaacaggaaggtagtgcaaaaagtagtaatcactccaatcaagaatagcccctttctcaacaccaagtctacttccataccctt |
31792536 |
T |
|
| Q |
101 |
cataagttgttggagagtttgcatattgttgcttagcctccataggcaagtgaaagaattgacgccaagtttccctagctttgtccatcaaatcatgact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31792537 |
cataagttgttggagagtttgcatattgttgcttagcctccataggcaagtgaaagaattgacgccaagtttccctagctttgtccatcaaatcaggact |
31792636 |
T |
|
| Q |
201 |
cactccatggtttacaatttggaagaaaccccaatcacgacaagcatcagaaatttgcttaaggattgaagcatgaacatcaaggtcatcaccatttaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31792637 |
cactccatggtttacaatttggaagaaaccccaatcacgacaagcatcagaaatttgcttaaggattgaagcatgaacatcaaggtcatcaccatttaac |
31792736 |
T |
|
| Q |
301 |
cctccaaggtctatgattggaatattgatatcatcataagaagaagtgtctacaattggcctatcagttggaggcttgatatacctatcagggattgaat |
400 |
Q |
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| T |
31792737 |
cctccaaggtctatgattggaatattgatatcatcataagaagaagtgtctacaattggcctatcagttggaggcttgatatacctatcagggattgaat |
31792836 |
T |
|
| Q |
401 |
ctttacatccttcagacaaggattgaactcggattatgggctctggccaatctttgtggctcttcaacattgctaatagctaggtttgctaaagttagct |
500 |
Q |
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| T |
31792837 |
ctttacatccttcagacaatgattgaactcggattatgggctctggccaatctttgtggctcttcaacattgctaatagctaggtttgctaaagttagct |
31792936 |
T |
|
| Q |
501 |
accact |
506 |
Q |
| |
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|||||| |
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| T |
31792937 |
accact |
31792942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 40 - 260
Target Start/End: Original strand, 35617281 - 35617501
Alignment:
| Q |
40 |
tagtaatcactccaatcaagaatagcccctttctcgacaccaagtctacttccatacccttcataagttgttggagagtttgcatattgttgcttagcct |
139 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||| ||| || | | |
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| T |
35617281 |
tagtaatcactccaatcaagaatagcacctttcttaacaccaagtctactaccatacccttcataagtttttggtgagtttgcatataattgtttcactt |
35617380 |
T |
|
| Q |
140 |
ccataggcaagtgaaagaattgacgccaagtttccctagctttgtccatcaaatcatgactcactccatggtttacaatttggaagaaaccccaatcacg |
239 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||| |||||||||||||| || || |||||||| |||||||| ||||| ||||| || |
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| T |
35617381 |
ccataggcaagtgaaaaaattgacgccaagtttccttagctaaatccatcaaatcatggctaacaccatggttaacaatttgaaagaatccccactcttt |
35617480 |
T |
|
| Q |
240 |
acaagcatcagaaatttgctt |
260 |
Q |
| |
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|||||| ||||| |||||||| |
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| T |
35617481 |
acaagcctcagagatttgctt |
35617501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 454
Target Start/End: Original strand, 35617617 - 35617695
Alignment:
| Q |
376 |
ttgatatacctatcagggattgaatctttacatccttcagacaaggattgaactcggattatgggctctggccaatctt |
454 |
Q |
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|||||||| || | ||||||||||||||| || | ||| || || ||||||||||||||||| ||||| |||||||||| |
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| T |
35617617 |
ttgatatatctttgagggattgaatctttgcaactttcggataaagattgaactcggattattggctcaggccaatctt |
35617695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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