View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20002_low_5 (Length: 487)

Name: NF20002_low_5
Description: NF20002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20002_low_5
NF20002_low_5
[»] chr7 (4 HSPs)
chr7 (24-379)||(45747983-45748342)
chr7 (367-474)||(45747861-45747968)
chr7 (24-105)||(8268714-8268795)
chr7 (29-104)||(2629061-2629136)
[»] chr6 (7 HSPs)
chr6 (24-105)||(11534302-11534383)
chr6 (24-105)||(11559812-11559893)
chr6 (29-105)||(20747896-20747972)
chr6 (24-105)||(11570340-11570421)
chr6 (24-105)||(25314048-25314129)
chr6 (24-105)||(26201542-26201623)
chr6 (29-105)||(4156949-4157025)
[»] chr2 (3 HSPs)
chr2 (29-97)||(38591638-38591706)
chr2 (24-105)||(19892066-19892146)
chr2 (31-63)||(19542191-19542223)
[»] chr5 (6 HSPs)
chr5 (24-105)||(37248396-37248477)
chr5 (24-71)||(9726381-9726428)
chr5 (24-74)||(26667695-26667745)
chr5 (24-74)||(26939292-26939342)
chr5 (29-71)||(36429137-36429179)
chr5 (24-56)||(13290950-13290982)
[»] chr4 (7 HSPs)
chr4 (24-105)||(19540774-19540855)
chr4 (29-105)||(12823484-12823560)
chr4 (29-71)||(19107036-19107078)
chr4 (24-105)||(8694135-8694215)
chr4 (24-105)||(16421460-16421541)
chr4 (24-105)||(6943202-6943283)
chr4 (24-105)||(32081720-32081801)
[»] chr3 (5 HSPs)
chr3 (24-68)||(27104128-27104172)
chr3 (29-70)||(2207375-2207416)
chr3 (29-105)||(46964435-46964511)
chr3 (24-105)||(757960-758041)
chr3 (31-71)||(18472435-18472475)
[»] chr1 (7 HSPs)
chr1 (24-104)||(47450821-47450901)
chr1 (24-92)||(33300853-33300921)
chr1 (24-71)||(16649262-16649309)
chr1 (24-71)||(26927347-26927394)
chr1 (29-104)||(28434229-28434304)
chr1 (24-105)||(38621126-38621207)
chr1 (24-104)||(39587962-39588042)
[»] chr8 (6 HSPs)
chr8 (24-105)||(15951146-15951227)
chr8 (24-74)||(7002071-7002121)
chr8 (24-105)||(38181838-38181919)
chr8 (24-104)||(1910551-1910631)
chr8 (24-64)||(14035851-14035891)
chr8 (24-104)||(18875984-18876064)
[»] scaffold0352 (1 HSPs)
scaffold0352 (24-71)||(7527-7574)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 24 - 379
Target Start/End: Complemental strand, 45748342 - 45747983
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattcacactacactaatttaaa 123  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  45748342 gactttgatcttaaaaatactctttattccgaagagacatatattatcaaattgactatatttttaagatcattcttaattcacactacactaatttaaa 45748243  T
Q  124 acctctgttttaaagttgttgtgagtattgatttaaaaggagtatatggtaccacacacgcagtcaggatagatgatcaaaaggaaatttcctttcactc 223  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  45748242 acctctcttttaaa-ttgttgtgagtattgatttaaaaggagtatatggtagcacacacgcagtcacgatagatgattaaaaggaaatttcctttcactc 45748144  T
Q  224 caccggtaatagatagacattattattattggattggatattgaataaatatttaaaggagtatattcttattnnnnnnnntgtactgtaaatga----- 318  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        || |||||||||||         
T  45748143 caccagtaatagatagacattattattattggattggatattgaataaatatttaaaggagtatattcttatt-aaaaaaatgaactgtaaatgaatata 45748045  T
Q  319 -atatatatannnnnnnggttacaactgtagatagaaatttccttgactttattattattat 379  Q
     |||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  45748044 tatatatatattttttttgttacaactgtagatagaaatttccttgactttattattattat 45747983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 367 - 474
Target Start/End: Complemental strand, 45747968 - 45747861
Alignment:
Q  367 ttattattattataactaataataaagtcaaggatacatattttttaacaaaaagtcaaaagattcatgaacaagaatagattattgagaaggactataa 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45747968 ttattattattataactaataataaagtcaaggatacatattttttaacaaaaagtcaaaagattcatgaacaagaatagattattgagaaggactataa 45747869  T
Q  467 tattattg 474  Q
    ||||||||    
T  45747868 tattattg 45747861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 8268714 - 8268795
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||| ||||||||||| ||||||||||||| ||| ||||||||||||| ||| ||| || ||||||||| |||| |||||||    
T  8268714 gactatgatcttaaaagtactctttattccgaagggacatatattatcgaatggactatgtttttaagaccattcttaattc 8268795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 2629061 - 2629136
Alignment:
Q  29 tgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaatt 104  Q
    |||||||||||||||||||||||| |||||||| || ||| |||||| ||| ||| | ||||||||||| ||||||    
T  2629061 tgatcttaaaaatactctttattctaaagagacgtaaattgtcaaatagactatactcttaagatcattcttaatt 2629136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 11534383 - 11534302
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||| ||||||||||| || |||||||||| ||| ||||||||||||||||| ||| || ||||||||| ||||||||||||    
T  11534383 gactatgatcttaaaagtattctttattcctaagggacatatattatcaaatggactatgtttttaagaccatttttaattc 11534302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 11559893 - 11559812
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||| ||||||||||| ||||||||||||| ||| ||||||||||||||||| ||| || ||||||||| |||| |||||||    
T  11559893 gactatgatcttaaaagtactctttattccgaagggacatatattatcaaatggactatgtttttaagaccattcttaattc 11559812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 20747972 - 20747896
Alignment:
Q  29 tgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||||  ||| || |||||||||||||| |||||||    
T  20747972 tgatcttaaaaatattctttattccgaagggacatatattatcaaagggactatgtttttaagatcattcttaattc 20747896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 11570421 - 11570340
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||| ||||||||||| ||||||||| ||| ||| ||||||||||||| ||| ||| || ||||||||| |||| |||||||    
T  11570421 gactatgatcttaaaagtactctttaatccgaagggacatatattatcgaatggactatgtttttaagaccattcttaattc 11570340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 25314129 - 25314048
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||| ||||||||||| ||||||||||||  ||| ||||||||||||| ||  ||| || |||||||||||||| |||||||    
T  25314129 gactatgatcttaaaagtactctttattctgaagggacatatattatcgaaaggactatgtttttaagatcattcttaattc 25314048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 26201623 - 26201542
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||| ||||||||||| ||||||||||||  ||| ||||||||||||| ||  ||| || |||||||||||||| |||||||    
T  26201623 gactatgatcttaaaagtactctttattctgaagggacatatattatcgaaaggactatgtttttaagatcattcttaattc 26201542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 4157025 - 4156949
Alignment:
Q  29 tgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    ||||||||| ||||||||||||||| ||| ||| ||||||||  || |||| || ||||||||| |||| |||||||    
T  4157025 tgatcttaataatactctttattccgaagggacttatattattgaagtgactatgtttttaagaccattcttaattc 4156949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 38591638 - 38591706
Alignment:
Q  29 tgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatt 97  Q
    ||||||||||||||||||||||| ||||| |||||| |||||||||| ||| || ||||||||||||||    
T  38591638 tgatcttaaaaatactctttattacaaagggacataaattatcaaatggactatgtttttaagatcatt 38591706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 19892146 - 19892066
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||| ||||||||||| ||||||||||||  ||| ||||||||||||| ||| ||| ||  |||||||| |||| |||||||    
T  19892146 gactatgatcttaaaagtactctttattctgaagggacatatattatcgaatggactat-gttttaagaccattcttaattc 19892066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 19542191 - 19542223
Alignment:
Q  31 atcttaaaaatactctttattccaaagagacat 63  Q
    ||||||||||||||||||||||| |||||||||    
T  19542191 atcttaaaaatactctttattccgaagagacat 19542223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 37248477 - 37248396
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||| ||||||||||| ||||||||||||  ||| ||||||||||||| ||  ||| || |||||||||||||| |||||||    
T  37248477 gactatgatcttaaaagtactctttattctgaagggacatatattatcgaagggactatgtttttaagatcattcttaattc 37248396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 9726428 - 9726381
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatc 71  Q
    |||| ||||||||||| ||||||||||||| ||| |||||||||||||    
T  9726428 gactatgatcttaaaagtactctttattccgaagggacatatattatc 9726381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 26667695 - 26667745
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaa 74  Q
    |||| ||||||||||| ||||||||||||  ||| ||||||||||||||||    
T  26667695 gactatgatcttaaaagtactctttattctgaagggacatatattatcaaa 26667745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 26939292 - 26939342
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaa 74  Q
    |||| ||||||||||| ||||||||||||  ||| ||||||||||||||||    
T  26939292 gactatgatcttaaaagtactctttattctgaagggacatatattatcaaa 26939342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 36429137 - 36429179
Alignment:
Q  29 tgatcttaaaaatactctttattccaaagagacatatattatc 71  Q
    ||||||||||||||||||||||||  ||| |||||||||||||    
T  36429137 tgatcttaaaaatactctttattctgaagggacatatattatc 36429179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 13290982 - 13290950
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaa 56  Q
    |||||||||||||||||||||||||||| ||||    
T  13290982 gactttgatcttaaaaatactctttatttcaaa 13290950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 19540855 - 19540774
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||| ||||||||||| ||||||||||||| ||| ||||||||||||| ||  ||| || ||||||||| |||| |||||||    
T  19540855 gactatgatcttaaaagtactctttattccgaagggacatatattatcgaagggactatgtttttaagaccattcttaattc 19540774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 12823560 - 12823484
Alignment:
Q  29 tgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    ||||||||| ||||||||||||||| ||  ||| ||||||||| ||| ||| || ||||||||| ||||||||||||    
T  12823560 tgatcttaataatactctttattccgaaaggacttatattatcgaatggactatgtttttaagaccatttttaattc 12823484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 19107036 - 19107078
Alignment:
Q  29 tgatcttaaaaatactctttattccaaagagacatatattatc 71  Q
    ||||||||||| ||||||||||||| |||||||||||||||||    
T  19107036 tgatcttaaaagtactctttattccgaagagacatatattatc 19107078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 8694135 - 8694215
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||| ||||||||||| |||||||||||| |||| ||||||||||||| ||| ||| ||  |||||||| |||| |||||||    
T  8694135 gactatgatcttaaaagtactctttattctaaagggacatatattatcgaatggactat-gttttaagaccattcttaattc 8694215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 16421460 - 16421541
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||| ||||||||| | ||||||||||||||||| ||| ||||||||| ||  ||| || ||||||||| |||| |||||||    
T  16421460 gactatgatcttaatagtactctttattccaaagggacttatattatcgaagggactatgtttttaagaccattcttaattc 16421541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 6943202 - 6943283
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||| |||||||||||||||| |||||||| ||  ||||||||||||| ||  ||| || ||||||||| | || |||||||    
T  6943202 gactatgatcttaaaaatactatttattccgaatggacatatattatcgaagagactatttttttaagacctttcttaattc 6943283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 32081801 - 32081720
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||| ||||||||| | ||||||||||||| ||| ||| ||||||||| ||  ||| || ||||||||| |||| |||||||    
T  32081801 gactatgatcttaatagtactctttattccgaagggacttatattatcgaagggactatgtttttaagaccattcttaattc 32081720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 27104172 - 27104128
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatatt 68  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||    
T  27104172 gactttgatcttaaaaataatctttattacaaagagacatatatt 27104128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 2207416 - 2207375
Alignment:
Q  29 tgatcttaaaaatactctttattccaaagagacatatattat 70  Q
    ||||||||||| ||||||||||||| ||||||||||||||||    
T  2207416 tgatcttaaaagtactctttattccgaagagacatatattat 2207375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 46964435 - 46964511
Alignment:
Q  29 tgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    ||||||||||| ||||||||||||  ||| ||||||||||||| ||  ||| || ||||||||| |||| |||||||    
T  46964435 tgatcttaaaagtactctttattctgaagggacatatattatcgaagagactatgtttttaagaccattcttaattc 46964511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 758041 - 757960
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||| ||||||||||| ||||||||| ||  ||| ||||||||||||| ||  ||| || ||||||||| |||| |||||||    
T  758041 gactatgatcttaaaagtactctttaatctgaagggacatatattatcgaagggactatgtttttaagaccattcttaattc 757960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 18472435 - 18472475
Alignment:
Q  31 atcttaaaaatactctttattccaaagagacatatattatc 71  Q
    ||||||||| |||||||||||| |||| |||||||||||||    
T  18472435 atcttaaaagtactctttattctaaagggacatatattatc 18472475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 47450901 - 47450821
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaatt 104  Q
    |||| ||||||||||| ||||||||||||| ||| ||||||||||||| ||  ||| || ||||||||| |||| ||||||    
T  47450901 gactatgatcttaaaagtactctttattccgaagggacatatattatcgaagagactatgtttttaagaccattcttaatt 47450821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 33300921 - 33300853
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaaga 92  Q
    |||| ||||||||||| ||||||||||||| ||| ||||||||||||| ||  ||| || |||||||||    
T  33300921 gactatgatcttaaaagtactctttattccgaagggacatatattatcgaagggactatgtttttaaga 33300853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 16649309 - 16649262
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatc 71  Q
    |||| ||||||||||||||||||||||||  ||| |||||||||||||    
T  16649309 gactatgatcttaaaaatactctttattctgaagggacatatattatc 16649262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 26927394 - 26927347
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatc 71  Q
    |||| ||||||||||||||||||||||||  ||| |||||||||||||    
T  26927394 gactatgatcttaaaaatactctttattctgaagggacatatattatc 26927347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 28434304 - 28434229
Alignment:
Q  29 tgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaatt 104  Q
    |||||||| ||||| |||||||| | ||||||||||||||||| ||| ||| ||  |||||||| |||| ||||||    
T  28434304 tgatcttacaaatattctttatttcgaagagacatatattatcgaatggactatgcttttaagaccattcttaatt 28434229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 38621126 - 38621207
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||| ||||||||| | || |||||||||| ||| ||| ||||||||||||  ||| || ||||||||| |||| |||||||    
T  38621126 gactatgatcttaatagtaatctttattccgaagggacttatattatcaaagggactatgtttttaagagcattattaattc 38621207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 39588042 - 39587962
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaatt 104  Q
    |||| ||||||||||| || |||||||||| | | ||||||||||||| ||  |||  | ||||||||| |||||||||||    
T  39588042 gactatgatcttaaaagtattctttattccgatgggacatatattatcgaagggactgtgtttttaagaccatttttaatt 39587962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 15951227 - 15951146
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||| ||||||||||| ||||||||||||  ||| ||||||||||||||||  ||| || |||| |||| |||| |||||||    
T  15951227 gactatgatcttaaaagtactctttattctgaagggacatatattatcaaagggactatgttttaaagaccattcttaattc 15951146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 7002071 - 7002121
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaa 74  Q
    |||| |||||||||||||| | |||||||||||| |||||| |||||||||    
T  7002071 gactatgatcttaaaaatattttttattccaaagggacataaattatcaaa 7002121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 38181919 - 38181838
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaattc 105  Q
    |||| |||||||||   ||||||||||||| ||| ||| ||||||||| ||  ||| || ||||||||| ||||||||||||    
T  38181919 gactatgatcttaatggtactctttattccgaagggacttatattatcgaagagactatgtttttaagaccatttttaattc 38181838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 1910631 - 1910551
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaatt 104  Q
    |||| ||||||||| | ||||||||||| | ||| ||| ||||||||| ||| ||| || ||||||||| |||| ||||||    
T  1910631 gactatgatcttaatagtactctttatttcgaagggacttatattatcgaatggactatgtttttaagaccattcttaatt 1910551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 14035851 - 14035891
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacata 64  Q
    |||| ||||||||||||||||||||||| | ||||||||||    
T  14035851 gactatgatcttaaaaatactctttatttcgaagagacata 14035891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 18876064 - 18875984
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatcaaattgaccatatttttaagatcatttttaatt 104  Q
    |||| ||||||||| | ||||||||||||| ||| ||| |||||||||  | |||| || ||||||||| |||| ||||||    
T  18876064 gactatgatcttaatattactctttattccgaagggacttatattatcggagtgactatgtttttaagaccattcttaatt 18875984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 7527 - 7574
Alignment:
Q  24 gactttgatcttaaaaatactctttattccaaagagacatatattatc 71  Q
    |||| ||||||||||| ||||||||||||  |||||||||||||||||    
T  7527 gactatgatcttaaaagtactctttattctgaagagacatatattatc 7574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University