View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20002_low_6 (Length: 480)
Name: NF20002_low_6
Description: NF20002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20002_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 463
Target Start/End: Original strand, 30009507 - 30009963
Alignment:
| Q |
17 |
tccgtgaaacactctttaaggaccttaaatagtaaatttatat--------aacatatcgaatattcgaaccctaaccaatgcgtaaggccaacctctta |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30009507 |
tccgtgtaacactctttaaggaccttaaatagtaaatttgtatgaaacatcaacatatcgaatattcgaaccctaaccaatgcgtaaggccaacctctta |
30009606 |
T |
|
| Q |
109 |
aattaatgtcattgccatgtagaaatataaccaaattcaaataaaata---tctaatatcataatttctagtccatacaatttctagtccataatagttc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30009607 |
aattaatgtcattgccatgtagaaatataaccaaattcaaacaaaatactatctaatatcataatttctagtccatacaatt-ctagtccataatagttc |
30009705 |
T |
|
| Q |
206 |
tctatcaggtcacctcnnnnnnnnnnnnnnnnnnnnnnnttttctctttgaggtcccacaagatagtatgaatacaatgatacctttctcttgaagccgt |
305 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30009706 |
tctatcaggtcacctcaaaaaacaaagaaaaaaacaaaattttgtctttgaggtcccacaagatagtatgaatacaatgatacctttctcttgaagccgt |
30009805 |
T |
|
| Q |
306 |
agaaactttaccacttccatggcaacctatttcaccacaactcccttttcacttctcaccataaaaccaccctcaccctctatacacaatcaacccctct |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30009806 |
agaaactttaccacttccatggcaacctatttcaccacaactcccttttcacttctcaccataaaaccaccctcaccctttatacacaatcaacccctct |
30009905 |
T |
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| Q |
406 |
ttctctcccttgtatccaaaaactttccattttgtgtaacctaacaactcctactatg |
463 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30009906 |
ttctctcccttgtatccaaaaacgttccattttgtgtaacctaacaactcctactatg |
30009963 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 47040671 - 47040700
Alignment:
| Q |
26 |
cactctttaaggaccttaaatagtaaattt |
55 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
47040671 |
cactctttaaggaccttaaatagtaaattt |
47040700 |
T |
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