View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20002_low_8 (Length: 462)
Name: NF20002_low_8
Description: NF20002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20002_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 75 - 444
Target Start/End: Original strand, 21080594 - 21080963
Alignment:
| Q |
75 |
acaaacaaatgcttaacaaacttcaacaaaatttctaactaactgagtttacttgttcaacaagtaactcccttaacttctaatcttgaactaactaact |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21080594 |
acaaacaaatgcttaacaaacttcaacaaaatttctaactaactgagtttacttgttcaacaagtaactcccttaacttctaatcttgaactaactaact |
21080693 |
T |
|
| Q |
175 |
aaccaactgaattataacaccctaacacacctcctaattcattagttagtgacttcaaccatgcctaacttgttcctcaagtattaaaagcttaccattg |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21080694 |
aaccaactgaattataacaccctaacacacctcctaattcattagttagtgacttcaaccatgcctaacttgttcctcaagtattaaaagcttaccattg |
21080793 |
T |
|
| Q |
275 |
ttgacttgatccctaagaaaatgaaaatgtgtctcagtgtgttggttctgccatgagccactatatgcttagccatgtcaattacatacttgttgtcaat |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21080794 |
ttgacttgatccctaagaaaatgaaaatgtgtctcagtgtgttggttctgccatgagccactatatgcttagccatttcaattacatacttgttgtcaat |
21080893 |
T |
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| Q |
375 |
caacaattccattttcttatcttccttcatattcatctctagcataagcatgctgatccattgagcttgt |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21080894 |
caacaattccattttcttatcttccttcatattcatctctagcataagcatgctgatccattgagcttgt |
21080963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 21070303 - 21070344
Alignment:
| Q |
20 |
taatatgtatggacttggcactcttaaagcagataatttcaa |
61 |
Q |
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| T |
21070303 |
taatatgtatggacttggcactcttaaagcagataatctcaa |
21070344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 20889807 - 20889712
Alignment:
| Q |
79 |
acaaatgcttaacaaacttcaacaaaatttctaactaactgagtttacttgttcaacaagtaactcccttaacttctaatcttgaactaactaact |
174 |
Q |
| |
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||||| |||||||||||||| | || ||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |
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| T |
20889807 |
acaaaagcttaacaaacttctaacaattttttaactaattgagtttacttgttcaacaagtaactcccttaactcctaattttaaactaactaact |
20889712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 28451018 - 28451088
Alignment:
| Q |
195 |
cctaacacacctcct-aattcattagttagtgacttcaaccatgcctaacttgttcctcaagtattaaaag |
264 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |||| |
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| T |
28451018 |
cctaatacacctccttaattcattagttagtgacttcaaccattcctagattgttcctcaagtattcaaag |
28451088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 20418125 - 20418088
Alignment:
| Q |
205 |
ctcctaattcattagttagtgacttcaaccatgcctaa |
242 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |
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| T |
20418125 |
ctcctagttcattagttagtgacttcaaccatgcctaa |
20418088 |
T |
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