View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20002_low_9 (Length: 457)
Name: NF20002_low_9
Description: NF20002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20002_low_9 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 34 - 457
Target Start/End: Original strand, 35276191 - 35276614
Alignment:
| Q |
34 |
cattgatattcataactgaagaaactaacctagtacatgagattcagccaaggtaaggcacacaaactttcccccaggctttaaaactctcttcacctgc |
133 |
Q |
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| T |
35276191 |
cattgatattcataactgaagaaactaacctagtacatgagattcagccaaggtaaggcacacaaactttcccccaggctttaaaactctcttcacctgc |
35276290 |
T |
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| Q |
134 |
aaaatcaaccaaaccaatttaacaaacacccaacactcaaattcaaattccgtctcaaatcaatcaattctataaaattattcatataaacctttgtagc |
233 |
Q |
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| T |
35276291 |
aaaatcaaccaaaccaatttaacaaacacccaacactcaaattcaaattccatctcaaatcaatctattctataaaattattcatataaacctttgtagc |
35276390 |
T |
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| Q |
234 |
accggcaaatgtgattacattcaacaattatgtcattttctgaaataactacatgtgtccacatgtcaatgccgtgtgcagtgtcatacatataataaat |
333 |
Q |
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| T |
35276391 |
accggcaaatgtgattacattcaacaattatgtcattttctgaaataactacatgtgtccacatgtcaatgccgtgtgcagtgtcatacatataataaat |
35276490 |
T |
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| Q |
334 |
agataaaaagatagaaacctcagagagatattgatttcccaaagtaggaccaagctcaggctccattaaagcatccaatccacctttatcaacaacagca |
433 |
Q |
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| T |
35276491 |
agataaaaagatagaaacctcagagagatattgatttcccaaagtaggaccaagctcaggctccattaaagcatccaatccacctttatcaacaacagca |
35276590 |
T |
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| Q |
434 |
ccnnnnnnntcatcttcaaactgc |
457 |
Q |
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| T |
35276591 |
ccaaaaaactcatcttcaaactgc |
35276614 |
T |
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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 145304 - 145266
Alignment:
| Q |
384 |
caagctcaggctccattaaagcatccaatccacctttat |
422 |
Q |
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| T |
145304 |
caagctctggctccattaaagcattcaatccacctttat |
145266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 291
Target Start/End: Complemental strand, 32640179 - 32640121
Alignment:
| Q |
233 |
caccggcaaatgtgattacattcaacaattatgtcattttctgaaataactacatgtgt |
291 |
Q |
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| T |
32640179 |
caccgacacatgtgattacattcaacaattaattcattttcttaaattactacaggtgt |
32640121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 9988711 - 9988770
Alignment:
| Q |
242 |
atgtgattacattcaacaattatgtcattttctgaaataactacatgtgtccacatgtcaatg |
304 |
Q |
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| T |
9988711 |
atgtgattacattcaa---ttatgtcattttctcaaataactacctgtgtggacgtgtcaatg |
9988770 |
T |
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