View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_11 (Length: 570)
Name: NF20003_high_11
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 17 - 563
Target Start/End: Original strand, 27360000 - 27360558
Alignment:
| Q |
17 |
acaccttgagaggagcattctctgcacaaaagaacccaacattccaacacctagaaaaatactcttttttataaccagcagaaacaacta-ttatattaa |
115 |
Q |
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| T |
27360000 |
acaccttgagaggagcattctctgcacaaaagaacccaacattccaacaccttgaaaaatactcttttttataaccagcagaaacaactaattatattaa |
27360099 |
T |
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| Q |
116 |
acaaggtgtacaatggatacaacacagaagaagagaaaaggcaaatccactcaactcgctacaaaacaggaccgctaacacctagcgatacaagcaatgg |
215 |
Q |
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| T |
27360100 |
acaaggtgtacaatggatacaacacagaagaagagaaa-ggcaaatccactcaactcgctacaaaagaggaccgctaacacctagcgatacaagcaatgg |
27360198 |
T |
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| Q |
216 |
aatcaacagaat-ttcattttatgaacacaatgctctactatcaaattggtagagtaatggttattgcttaggcgaatatccattgcatgaagcatgtca |
314 |
Q |
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| T |
27360199 |
aatcaacagaacattcattttatgaacacaatgctctactatcaaattggtagagtaatggttattgcttaggtgaatatccattgcatgaagcatgtca |
27360298 |
T |
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| Q |
315 |
tgagattcaagggtctactatcactttgaaagtttgatcaaacta---tcttattatgtttctgttcgtacttattttctgagctgaatattcaaaccaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27360299 |
tgagattcaagggtctactatcactttgaaagtttgatcaaactatcttcttattatgtttctgttcatacttattttctgagctgaatattcaaaccaa |
27360398 |
T |
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| Q |
412 |
gca--------ttaatccaagaacaatcctgtttccaacaagcaaccctgtgtgagcacaagcagagtcaccattgtactctcattcaaggctagttcaa |
503 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27360399 |
gcaagtggtatctaatccaagaacaatcctgtttccaacaagcaaccctgtgtgagcacaagcagagtcaccattgtactcttattcaaggctagttcaa |
27360498 |
T |
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| Q |
504 |
agcagtcacttaggacataaatagcctgcaatcatggtattccaagactccacacctttg |
563 |
Q |
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| T |
27360499 |
agcagtcacttaggacatacattgcctgcaatcatggtattccaagactccacacctttg |
27360558 |
T |
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