View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20003_high_12 (Length: 565)

Name: NF20003_high_12
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20003_high_12
NF20003_high_12
[»] chr5 (1 HSPs)
chr5 (1-549)||(41279453-41280016)
[»] chr4 (3 HSPs)
chr4 (128-185)||(43061685-43061743)
chr4 (124-175)||(48557610-48557661)
chr4 (125-163)||(49982831-49982869)
[»] chr2 (1 HSPs)
chr2 (124-181)||(26326116-26326173)
[»] chr3 (6 HSPs)
chr3 (124-163)||(35335586-35335625)
chr3 (147-194)||(35990529-35990576)
chr3 (129-171)||(27019696-27019738)
chr3 (116-181)||(51497967-51498032)
chr3 (124-176)||(2608424-2608476)
chr3 (125-181)||(26643295-26643351)
[»] chr8 (1 HSPs)
chr8 (147-181)||(33697158-33697192)


Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 41279453 - 41280016
Alignment:
Q  1 acaataaagatagataactaaaccgaaaattcaccatagctatattcgtataacaaaaataccgtctcagttcttataggaagcttgtagctatgaagta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41279453 acaataaagatagataactaaaccgaaaattcaccatagctatagtcgtataacaaaaatactgtctcagttcttataggaagcttgtagctatgaagta 41279552  T
Q  101 ctaaacacgcacggacaccagactgacactgacacatcgagactagtaataatttgagaaaataaaataactgaatataacaacaagagtcagtttcatg 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41279553 ctaaacacgcacggacacgagactgacactgacacatcgagactagtaataatttgagaaaataaaataactgaatataacaacaagagtcagtttcatg 41279652  T
Q  201 tcgaacactgacacgtgtgtcggggtgctacataggcttgtagtgtgaaaacgttgactaaaattggtatcaggtgaatagttaaggtttatgggattaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41279653 tcgaacactgacacgtgtgtcggggtgctacataggcttgtagtgtgaaaacgttgactaaaattggtatcaggtgaatagttaaggtttatgggattaa 41279752  T
Q  301 tatattactcaattaattaaaagatgtaaacatgaagaagattatattgaagtgtaatcagccattttgaaacaagaaaagcaatcatccaccaatcaca 400  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41279753 tatattactcaattaattaaaagatgtgaacatgaagaagattatattgaagtgtaatcagccattttgaaacaagaaaagcaatcatccaccattcaca 41279852  T
Q  401 atctgtaa-tttcagatttattatagtttcatccaactagccaacaccaaag--------------tttcataatctacatgtgcataatattagttctt 485  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||    
T  41279853 atctgtaattttcagatttattataggttcatccaactagccaacaccaaagtttaagtgtccaattttcataatctacatgtgcataatattagttctt 41279952  T
Q  486 tgaacataacagaaactttacttttaatcggtaataatcactctgctttagtttttaactttct 549  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41279953 tgaacataacagaaactttacttttaatcggtaataatcactctgctttagtttttaactttct 41280016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 43061743 - 43061685
Alignment:
Q  128 actgacacatcgagactagtaataatttgagaaaata-aaataactgaatataacaaca 185  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||| ||||| ||||||||    
T  43061743 actgaaacatcgacactagtaataatttgagaaaatataaataattgaatgtaacaaca 43061685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 48557610 - 48557661
Alignment:
Q  124 tgacactgacacatcgagactagtaataatttgagaaaataaaataactgaa 175  Q
    |||||||||||||| || |||||||| ||||||||||||| || ||||||||    
T  48557610 tgacactgacacattgacactagtaaaaatttgagaaaatgaattaactgaa 48557661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 49982869 - 49982831
Alignment:
Q  125 gacactgacacatcgagactagtaataatttgagaaaat 163  Q
    |||||||||||||||| || |||||||||||||||||||    
T  49982869 gacactgacacatcgaaaccagtaataatttgagaaaat 49982831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 26326116 - 26326173
Alignment:
Q  124 tgacactgacacatcgagactagtaataatttgagaaaataaaataactgaatataac 181  Q
    |||||||||||||||||||| ||| ||| ||| |||||||||||||| | ||||||||    
T  26326116 tgacactgacacatcgagaccagtgatagtttaagaaaataaaataattaaatataac 26326173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 35335586 - 35335625
Alignment:
Q  124 tgacactgacacatcgagactagtaataatttgagaaaat 163  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  35335586 tgacactgacacatagacactagtaataatttgagaaaat 35335625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 35990576 - 35990529
Alignment:
Q  147 taataatttgagaaaataaaataactgaatataacaacaagagtcagt 194  Q
    |||||||||||||||||||||||||||||| |||| ||| | ||||||    
T  35990576 taataatttgagaaaataaaataactgaatgtaaccacatgtgtcagt 35990529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 27019738 - 27019696
Alignment:
Q  129 ctgacacatcgagactagtaataatttgagaaaataaaataac 171  Q
    ||||||| | ||||||| |||||||||||||||||||||||||    
T  27019738 ctgacacgttgagactactaataatttgagaaaataaaataac 27019696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 51497967 - 51498032
Alignment:
Q  116 caccagactgacactgacacatcgagactagtaataatttgagaaaataaaataactgaatataac 181  Q
    ||||| ||||| |||||||| || | |||||||||||||||| |||||| ||||| ||||| ||||    
T  51497967 caccatactgatactgacacgtccacactagtaataatttgataaaatagaataattgaatgtaac 51498032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 2608424 - 2608476
Alignment:
Q  124 tgacactgacacatcgagactagtaataatttgagaaaataaaataactgaat 176  Q
    |||||||||||||| || |||| ||||| |||||||||| ||| |||||||||    
T  2608424 tgacactgacacattgacactaataatattttgagaaaagaaattaactgaat 2608476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 26643351 - 26643295
Alignment:
Q  125 gacactgacacatcgagactagtaataatttgagaaaataaaataactgaatataac 181  Q
    ||||||||||| |||| ||| |||||||||| |||||||| ||||| ||||| ||||    
T  26643351 gacactgacacgtcgatactggtaataatttaagaaaatagaataattgaatgtaac 26643295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 181
Target Start/End: Complemental strand, 33697192 - 33697158
Alignment:
Q  147 taataatttgagaaaataaaataactgaatataac 181  Q
    |||||||||||||||||||||||| ||||||||||    
T  33697192 taataatttgagaaaataaaataattgaatataac 33697158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University