View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_14 (Length: 535)
Name: NF20003_high_14
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 49042902 - 49042379
Alignment:
| Q |
1 |
tattgcatttcaaccaccatgtgttttcataagatttgttgtaa-tatggcctcatattactctgccttgtagtgatgatcacatgtttagcttcctgta |
99 |
Q |
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| T |
49042902 |
tattgcatttcaaccaccatgtgttttcataagattagttgtaaatatggcctcatattactctgccttgtagtgatgatcacatgtttagcttcctgca |
49042803 |
T |
|
| Q |
100 |
ggataataatctaaactgctcaccagaagtgtgatagaattgaaacagctagcacgctaatctgaatagcgtatatgtaatgtaagaatggtgagcaaga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
49042802 |
ggataataatctaaactgctcaccagaagtgtgatagaattgaaacagctagcacgctaatctgaatagcgtatatgtaatttaagaatggtgagcaaga |
49042703 |
T |
|
| Q |
200 |
agtcaaaatgctaatcctgtagttgactctgacatttttacaattgttgtgaacttttcaaaacccacatccgtaatgtatctagcagccaagaaaaata |
299 |
Q |
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| T |
49042702 |
agtcaaaatgctaatcctatagttgactctgacatttttacaattgttgtgaacttttcaaaacccacatccgtaatgtatctagcagccaagaaaaata |
49042603 |
T |
|
| Q |
300 |
aatatgtagtatgtttactaatttcacatgcatatatcagcccctaatttcattattggctgtactatatacattcttgatagatgcacaatggaaacaa |
399 |
Q |
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| T |
49042602 |
aatatgtagtatgtttactaatttcacatgcatatatcagcccctaatttcattattggctgtactatatacattcttgatagatgcacaatggaaacaa |
49042503 |
T |
|
| Q |
400 |
ggcaaaacagtagtttgatgattgattgaatgaggaaacagaatataaagggttcttgtccaccttacatgaggaaaatacatatgtaagcaggcatcaa |
499 |
Q |
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| T |
49042502 |
ggcaaaacagtagtttgatgattgattgaatgaggaaacaaaatataaatggttcttgtccaccttacatgaggaaaatacatatgtaagcaggcatcaa |
49042403 |
T |
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| Q |
500 |
aaagcttttctaatgaagaaagtg |
523 |
Q |
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| T |
49042402 |
aaagcttttctaatgaagaaagtg |
49042379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 367 - 454
Target Start/End: Complemental strand, 49040169 - 49040083
Alignment:
| Q |
367 |
tatacattcttgatagatgcacaatggaaacaaggcaaaacagtagtttgatgattgattgaatgaggaaacagaatataaagggttc |
454 |
Q |
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| T |
49040169 |
tatacatgcttcatagatgcacaatgaaaa-aaggcaaaacagaagtttgatgattgattgaatgagcaaacataatataaagggttc |
49040083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 48889604 - 48889673
Alignment:
| Q |
76 |
tgatcacatgtttagcttcctgtaggataataatctaaactgctcaccagaagtgtgatagaattgaaacagc |
148 |
Q |
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| T |
48889604 |
tgatcacatgttcagcttcctgtaggataa---tctaaactgcttatcagaagtgtgatagaattgaaacagc |
48889673 |
T |
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