View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_15 (Length: 522)
Name: NF20003_high_15
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 196 - 506
Target Start/End: Complemental strand, 37626897 - 37626590
Alignment:
| Q |
196 |
tcaattgattcttatttaagaatctttttctaattcaactttttggtagtgtgatatagtattcaatacggattcaaatttggtgcagtcacaaatttct |
295 |
Q |
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| T |
37626897 |
tcaattgtttcttatttaagaatctttttctaattcaactttttggtagtgtgatatagtattcaatacggattcaaatttggtgcagtcacaaatttct |
37626798 |
T |
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| Q |
296 |
tgcatttctacattcagcacattggtgaccattgtggataaaggtcggacggtgtagaaatcaagcaaattttattttttcaatcacaaatactgtcaga |
395 |
Q |
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| T |
37626797 |
tgcatttctacattcagcacattggtgaccat--tggataaaggtcggacggtgtagaaatcaagcaaa-tttaatttttaaatctcaaatactgtcaga |
37626701 |
T |
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| Q |
396 |
tgaccttgatcaaacaatcactggtcactgatacgatgatacaatgcaaccaatccattcaatacacacttaattcaattttctattatagtgtaatctt |
495 |
Q |
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| T |
37626700 |
tgaccttgatcaaacaatcactggtcactgatacgaggatgcaatgcaaccaatccattcaatacacacttaattcaattttttattatagtgtaatctt |
37626601 |
T |
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| Q |
496 |
gagcataaagt |
506 |
Q |
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| T |
37626600 |
gagcataaagt |
37626590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 37627092 - 37626940
Alignment:
| Q |
1 |
agaaacactctgttggcctatctcttgcaaaacttagtctttcaataagtcccaactctttcgaccacctaaacaaaatccaataaattagttacaaaat |
100 |
Q |
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| T |
37627092 |
agaaacactctgttggtctatctcttgcaaaacttagtctttcaataagtcccaactctttcgaccacctaaacaaaatccaataaattagttacaaaat |
37626993 |
T |
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| Q |
101 |
gtagcatttctcagggaaattgttgcattcttggcatacatcatttgaatttg |
153 |
Q |
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| T |
37626992 |
gtagcatttctaagggaaattgttgcattcttggcatacatcatttgaatttg |
37626940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 438 - 506
Target Start/End: Complemental strand, 37618276 - 37618208
Alignment:
| Q |
438 |
aatgcaaccaatccattcaatacacacttaattcaattttctattatagtgtaatcttgagcataaagt |
506 |
Q |
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| T |
37618276 |
aatgcaaccaatccatccaatacacacttaattcaattttttattatagtgtaatcttgagcataaagt |
37618208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 37618678 - 37618569
Alignment:
| Q |
1 |
agaaacactctgttggcctatctcttgcaaaacttagtctttcaataagtcccaactctttcgaccacctaaacaaaatccaataaattagttacaaaat |
100 |
Q |
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|||| ||||||||||| |||||||||||||||| ||| |||||| |||||||||||||||| ||||||||||| ||||| |||||| |||||| |||| |
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| T |
37618678 |
agaagcactctgttggtctatctcttgcaaaaccaagtttttcaacaagtcccaactctttccaccacctaaac-aaatcaaataaactagttatgaaat |
37618580 |
T |
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| Q |
101 |
gtagcatttct |
111 |
Q |
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| T |
37618579 |
gtagcatttct |
37618569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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