View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_17 (Length: 517)
Name: NF20003_high_17
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 11 - 452
Target Start/End: Complemental strand, 887372 - 886937
Alignment:
| Q |
11 |
caaaggtagcttaataaaaaggtgctcaccgacagttttatataatgtttaactagtaattcaaacttcacattgtttttgttgtttgtgatgctcaata |
110 |
Q |
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|||||||||||| | ||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
887372 |
caaaggtagcttcacaaaaaggtgctcaccgagagggttatataatgttcaacttgtaattcaaacttcacattgtt------gtttgtgatgctcaata |
887279 |
T |
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| Q |
111 |
ttataggcttcaaataatctttgctcacttggtctatagactgaaatatcttacccgtccaacaaattagatcgtcttcctcagcttgtttaaacgttcc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
887278 |
ttataggcttcaaataatctttgctcacttggtctatagactgaaatatcttacccgtccaacaaattagatcgtcttcctcagcttttttaaacgttcc |
887179 |
T |
|
| Q |
211 |
tttattattcaattctgtgtttatctaaaatatcaattaatatttgatcaacaaccactatgaactgaaaacgttatagttatttaatttctatgatttt |
310 |
Q |
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| T |
887178 |
tttattattcaattctgtgtttatctaaaatatcaattaatatttgatcaacaaccactatgaactgaaaacgttatagttatttaatttctatgatttt |
887079 |
T |
|
| Q |
311 |
tgctcacaagtttgagaagaacttcatagtctttagaattgaggtatgaaagggtggttccactatcaaacataacgttaagacccttaataggagtatg |
410 |
Q |
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|||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| || ||||||||||||| |
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| T |
887078 |
tgctcacaagatcgagaagaactttatagtctttagaattgaggtatgaaagggtggttccactatcaaacaaaaggctaagaaccctaataggagtatg |
886979 |
T |
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| Q |
411 |
aatttcattgtaaagcagatccgcttgtcctgcaaaatagtg |
452 |
Q |
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| T |
886978 |
aattccattgtaaagcagatccgcttgtcctgcataatagtg |
886937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 31875184 - 31875246
Alignment:
| Q |
228 |
tgtttatctaaaatatcaattaatatttgatcaacaaccactatgaactgaaaacgttatagt |
290 |
Q |
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| T |
31875184 |
tgtttatctaaaatattaattaatatttgatcaacaaccactatgaactgaaaatgttatagt |
31875246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 271
Target Start/End: Original strand, 31881544 - 31881715
Alignment:
| Q |
106 |
caatattataggcttcaaataatctttgctcacttggtctatagactgaaatatctt---acccgtccaacaaattagatcgtcttcctcagcttgttta |
202 |
Q |
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|||||| |||||||||||||| |||||||||||| ||||||||||| |||| || |||| |||||||| ||||| ||||||||| | || || |
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| T |
31881544 |
caatatcataggcttcaaataccctttgctcacttcgtctatagacttaaatggtttgtcacccttccaacaatttagaccgtcttccttaataggtgta |
31881643 |
T |
|
| Q |
203 |
aacgttc---ctttattattcaattctgtgtttatctaaaatatcaattaatatttgatcaacaaccactat |
271 |
Q |
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| T |
31881644 |
aactttcttcctttaaaattcaattcaatgtgtatctgaaatattaattaatatttgatcaacaaccactat |
31881715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 31875053 - 31875100
Alignment:
| Q |
104 |
ctcaatattataggcttcaaataatctttgctcacttggtctatagac |
151 |
Q |
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|
| T |
31875053 |
ctcattattataggcttcaaatagtctttgctcacttcgtctatagac |
31875100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 29146628 - 29146696
Alignment:
| Q |
184 |
gtcttcctcagcttgtttaaacgttcctttattattcaattctgtgtttatctaaaatatcaattaata |
252 |
Q |
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|||||||| ||||||| |||||||| |||| |||||||||| ||||||||| ||||||||||||||| |
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| T |
29146628 |
gtcttccttagcttgtgtaaacgtttctttcgaattcaattctttgtttatctgaaatatcaattaata |
29146696 |
T |
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