View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_20 (Length: 494)
Name: NF20003_high_20
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 18644807 - 18645291
Alignment:
| Q |
1 |
accacccgacaaaaacaagatattgttctgagccttcggtaaatggagcccacacaacttggccagcgctcaaagatttgtcaattcctttgacagcttg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18644807 |
accacccgacaaaaacaagatattgttctgagccttcggtaaatggagcccacacaacttggccagcgctcaaagatttgtcaattcctttgacagcttg |
18644906 |
T |
|
| Q |
101 |
cacctctccactgcgaaaatactagttaaagtaagattactctgttgtgaattgtgaaattcggaaaatagcagtttgttcaaatttggctattctacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18644907 |
cacctctccactgcgaaaatactagttaaagtaagattactctgttgtgaattgtgaaattcggaaaatagcagtttgttcaaatttggctattctacac |
18645006 |
T |
|
| Q |
201 |
tgcgatagagccactatttgagagcactttgtactaaacaatgtatcatcgcacaatagcaattagataaagttatgttgtgcgacagcgctacagtgcc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18645007 |
tgcgatagagccactatttgagagcactttgtactaaacaatgtatcatcgcacaatagcaattagataaagttatgttgtgcgacagcgctacagtgcc |
18645106 |
T |
|
| Q |
301 |
tctattgccgctacttgacaactattgagtattgatcctaaataatatctgacatgaatatgaatgatgaaaaacctgttgatgttgataacaaaaagtg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18645107 |
tctattgccgctacttgacaactattgagtattgatcctaaataatatctgacatgaatatgaatgatgaaaaacctgttgatgttgataacaaaaagtg |
18645206 |
T |
|
| Q |
401 |
taggttgtctctttgcagcatatgtttctccccaatcctcctcccactctccttgacctttccagataccaaaatcattctctgc |
485 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18645207 |
taggttgtctctttgcagcatatgtttctccccaatcctcctcccactctccttgacctttccagataccaaaatcattctctgc |
18645291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 18635567 - 18635671
Alignment:
| Q |
9 |
acaaaaacaagatattgttctgagccttcggtaaatggagcccacacaacttggccagcgctcaaagatttgtcaattcctttgacagcttgcacctctc |
108 |
Q |
| |
|
|||||||| | ||||||| | |||||||| | ||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||||| ||||||| |
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| T |
18635567 |
acaaaaaccaaatattgtgcagagccttcacttgatggagcccacacaacttggccaacactcaaagatttgtcaatgcctttgacggcttgaacctctc |
18635666 |
T |
|
| Q |
109 |
cactg |
113 |
Q |
| |
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||||| |
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|
| T |
18635667 |
cactg |
18635671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 382 - 465
Target Start/End: Original strand, 18635755 - 18635838
Alignment:
| Q |
382 |
atgttgataacaaaaagtgtaggttgtctctttgcagcatatgtttctccccaatcctcctcccactctccttgacctttccag |
465 |
Q |
| |
|
||||| || |||||||||| ||| ||||| ||| | ||||||||||||||||| || |||||||| |||||||||||||||||| |
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|
| T |
18635755 |
atgtttatgacaaaaagtgcaggctgtctttttcccgcatatgtttctccccagtcttcctcccaatctccttgacctttccag |
18635838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 17501036 - 17501098
Alignment:
| Q |
178 |
gttcaaatttggctattctacactgcgatagagccactatttgagagcactttgtactaaaca |
240 |
Q |
| |
|
||||||||| ||||| ||||| ||| |||| | |||||||||| |||||||||||||||||| |
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|
| T |
17501036 |
gttcaaattctgctatgctacaatgctatagcgtcactatttgacagcactttgtactaaaca |
17501098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 15086970 - 15086866
Alignment:
| Q |
9 |
acaaaaacaagatattgttctgagccttcggtaaatggagcccacacaacttggccagcgctcaaagatttgtcaattcctttgacagcttgcacctctc |
108 |
Q |
| |
|
|||||||| | ||||||| | |||||||| | ||||||||||||||||||||||| | |||||| || ||||||| |||||||| ||||| ||||||| |
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| T |
15086970 |
acaaaaaccaaatattgtgcagagccttcacttgatggagcccacacaacttggccaacactcaaaaatctgtcaatgcctttgacggcttgaacctctc |
15086871 |
T |
|
| Q |
109 |
cactg |
113 |
Q |
| |
|
||||| |
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|
| T |
15086870 |
cactg |
15086866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 382 - 465
Target Start/End: Complemental strand, 15086782 - 15086699
Alignment:
| Q |
382 |
atgttgataacaaaaagtgtaggttgtctctttgcagcatatgtttctccccaatcctcctcccactctccttgacctttccag |
465 |
Q |
| |
|
||||| || |||||||||| ||| ||||| ||| | ||||||||||||||||| || |||||||| |||||||||||||||||| |
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|
| T |
15086782 |
atgtttatgacaaaaagtgcaggctgtctttttcccgcatatgtttctccccagtcttcctcccaatctccttgacctttccag |
15086699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 14821626 - 14821564
Alignment:
| Q |
178 |
gttcaaatttggctattctacactgcgatagagccactatttgagagcactttgtactaaaca |
240 |
Q |
| |
|
||||||||| ||||| ||||| ||| |||| | |||||||||| |||||||||||||||||| |
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|
| T |
14821626 |
gttcaaattctgctatgctacaatgctatagcgtcactatttgacagcactttgtactaaaca |
14821564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 15268632 - 15268570
Alignment:
| Q |
178 |
gttcaaatttggctattctacactgcgatagagccactatttgagagcactttgtactaaaca |
240 |
Q |
| |
|
||||||||| ||||| ||||| ||| |||| | |||||||||| |||||||||||||||||| |
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|
| T |
15268632 |
gttcaaattctgctatgctacaatgctatagcgtcactatttgacagcactttgtactaaaca |
15268570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 34925272 - 34925346
Alignment:
| Q |
163 |
ggaaaatagcagtttgttcaaatttggctattctacactgcgatagagccactatttgagagcactttgtactaaac |
239 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||| || |||| |||||||| | || |||||||||||| |
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| T |
34925272 |
ggaaaatagcagtttgttcaaattctgctatgctacaatgc--tatagccgctatttgacaacattttgtactaaac |
34925346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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