View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20003_high_21 (Length: 493)

Name: NF20003_high_21
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20003_high_21
NF20003_high_21
[»] chr5 (2 HSPs)
chr5 (17-476)||(8043482-8043941)
chr5 (40-152)||(8052193-8052305)
[»] chr4 (1 HSPs)
chr4 (54-136)||(53395491-53395573)
[»] chr8 (1 HSPs)
chr8 (31-117)||(32641138-32641224)
[»] chr2 (7 HSPs)
chr2 (56-129)||(32158693-32158766)
chr2 (56-129)||(32111281-32111354)
chr2 (56-129)||(32119303-32119376)
chr2 (56-129)||(32157275-32157348)
chr2 (56-129)||(32182991-32183064)
chr2 (38-129)||(32174934-32175025)
chr2 (56-129)||(32211520-32211593)
[»] chr6 (4 HSPs)
chr6 (78-141)||(2833324-2833387)
chr6 (78-141)||(2860633-2860696)
chr6 (78-141)||(2866012-2866075)
chr6 (78-141)||(2885202-2885265)
[»] chr7 (1 HSPs)
chr7 (54-135)||(1800807-1800888)
[»] chr1 (1 HSPs)
chr1 (209-245)||(6971027-6971063)


Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Complemental strand, 8043941 - 8043482
Alignment:
Q  17 ttaccaagttgaagatcaaatatatcaaacttcaaataattagccatagcagcaatcaaactagatttcccagttcctggaggaccatacaacaaataac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8043941 ttaccaagttgaagatcaaatatatcaaacttcaaataattagccatagcagcaatcaaactagatttcccagttcctggaggaccatacaacaaataac 8043842  T
Q  117 cacgtttccaagccctaccaactttcttataaaactctcttctcttcacaaacatgttcaaatcttctataataacattcttcatgtctggctccatagc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8043841 cacgtttccaagccctaccaactttcttataaaactctcttctcttcacaaacatgttcaaatcttctataataacattcttcatgtctggctccatagc 8043742  T
Q  217 aagtgtttcaaatgttgaaggatgttcaagatttattgaatcccatttcacaccgctataacaataagtagtgtttaatgtatgcattttcaacactctt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8043741 aagtgtttcaaatgttgaaggatgttcaagatttattgaatcccatttcacaccgctataacaataagcagtgtttaatgtatgcattttcaacactctt 8043642  T
Q  317 tcttcatctttcatttctttagctttatcaagaatgaaaggaagataagaatccaaaacaacttccttatactttttgtgaaaacttagttcaaaatatt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8043641 tcttcatctttcatttctttagctttatcaagaatgaaaggaagataagaatccaaaacaacttccttatactttttgtgaaaacttagttcaaaatatt 8043542  T
Q  417 ttttctctgatctaacagatacactgttattattgttgtgcatatcatttgcactgtttt 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8043541 ttttctctgatctaacagatacactgttattattgttgtgcatatcatttgcactgtttt 8043482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 8052305 - 8052193
Alignment:
Q  40 atcaaacttcaaataattagccatagcagcaatcaaactagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagccctaccaact 139  Q
    |||||| |||||||| || |||||||||||||| | ||||||||| || |||||||| ||||||||||| || |||||||||||||||| | ||||||||    
T  8052305 atcaaatttcaaatactttgccatagcagcaataagactagattttcctgttcctggtggaccatacaataagtaaccacgtttccaaggcttaccaact 8052206  T
Q  140 ttcttataaaact 152  Q
    || ||||| ||||    
T  8052205 tttttatacaact 8052193  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 53395573 - 53395491
Alignment:
Q  54 aattagccatagcagcaatcaaactagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagccctacca 136  Q
    |||||||||||||||||||||  |||||||| |||||||||||||||||||| |  | |||||| | ||||||||||||||||    
T  53395573 aattagccatagcagcaatcatgctagattttccagttcctggaggaccataaagaagataacctcttttccaagccctacca 53395491  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 32641138 - 32641224
Alignment:
Q  31 atcaaatatatcaaacttcaaataattagccatagcagcaatcaaactagatttcccagttcctggaggaccatacaacaaataacc 117  Q
    |||| |||||||||| | ||||||||| ||||||||||||| |||||||   ||||||||||| || |||||||||||||| |||||    
T  32641138 atcatatatatcaaaatgcaaataattcgccatagcagcaaccaaactactcttcccagttccaggtggaccatacaacaagtaacc 32641224  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 32158693 - 32158766
Alignment:
Q  56 ttagccatagcagcaatcaaactagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagc 129  Q
    |||||||| || |||||||||||||| || ||||| || ||||| ||||||||||| ||||| |||||||||||    
T  32158693 ttagccatggctgcaatcaaactagactttccagtaccaggagggccatacaacaagtaaccgcgtttccaagc 32158766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 32111281 - 32111354
Alignment:
Q  56 ttagccatagcagcaatcaaactagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagc 129  Q
    |||||||| || |||||||| ||||| || ||||| || ||||| ||||||||||| ||||| |||||||||||    
T  32111281 ttagccatggctgcaatcaagctagactttccagtaccaggagggccatacaacaagtaaccgcgtttccaagc 32111354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 32119303 - 32119376
Alignment:
Q  56 ttagccatagcagcaatcaaactagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagc 129  Q
    |||||||| || |||||||| ||||| || ||||| || |||||||| |||||||| ||||| |||||||||||    
T  32119303 ttagccatggctgcaatcaagctagactttccagtaccaggaggaccgtacaacaagtaaccgcgtttccaagc 32119376  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 32157275 - 32157348
Alignment:
Q  56 ttagccatagcagcaatcaaactagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagc 129  Q
    |||||||| || |||||||| ||||| || ||||| || ||||| ||||||||||| ||||| |||||||||||    
T  32157275 ttagccatggctgcaatcaagctagactttccagtaccaggagggccatacaacaagtaaccgcgtttccaagc 32157348  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 32182991 - 32183064
Alignment:
Q  56 ttagccatagcagcaatcaaactagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagc 129  Q
    |||||||| || |||||||| ||||| || ||||| || || |||||||||||||| ||||| |||||||||||    
T  32182991 ttagccatggctgcaatcaagctagactttccagtaccaggtggaccatacaacaagtaaccgcgtttccaagc 32183064  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 32174934 - 32175025
Alignment:
Q  38 atatcaaacttcaaataattagccatagcagcaatcaaactagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagc 129  Q
    |||||| |||| | ||| |||||||| ||||||||||| ||||| || ||||| |  || |||||| ||||||| ||||| |||||||||||    
T  32174934 atatcatacttgagatagttagccatggcagcaatcaagctagactttccagtacaaggtggaccaaacaacaagtaaccgcgtttccaagc 32175025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 32211593 - 32211520
Alignment:
Q  56 ttagccatagcagcaatcaaactagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagc 129  Q
    |||||||| || |||||||| ||||| || ||||| || || |||||||||||||| ||||| |||| ||||||    
T  32211593 ttagccatggctgcaatcaagctagactttccagtaccaggtggaccatacaacaagtaaccgcgttgccaagc 32211520  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 2833324 - 2833387
Alignment:
Q  78 tagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagccctaccaacttt 141  Q
    ||||||| |||||||||||||||||||| |  | ||||||||||||||||||| | ||||||||    
T  2833324 tagattttccagttcctggaggaccataaagtagataaccacgtttccaagcctttccaacttt 2833387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 2860633 - 2860696
Alignment:
Q  78 tagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagccctaccaacttt 141  Q
    ||||||||||||||||||| |||||||| |  | |||||| |||||||||||| | ||||||||    
T  2860633 tagatttcccagttcctggtggaccatagagtagataaccccgtttccaagcctttccaacttt 2860696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 2866012 - 2866075
Alignment:
Q  78 tagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagccctaccaacttt 141  Q
    ||||||||||||||||||| |||||||| |  | |||||| |||||||||||| | ||||||||    
T  2866012 tagatttcccagttcctggtggaccatagagtagataaccgcgtttccaagcctttccaacttt 2866075  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 2885202 - 2885265
Alignment:
Q  78 tagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagccctaccaacttt 141  Q
    ||||||||||||||||||| |||||||| |  | |||||| |||||||||||| | ||||||||    
T  2885202 tagatttcccagttcctggtggaccataaagtagataaccccgtttccaagcctttccaacttt 2885265  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 1800888 - 1800807
Alignment:
Q  54 aattagccatagcagcaatcaaactagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagccctacc 135  Q
    |||| |||||||| || |||| | ||||||| || ||||||||||||||||| |  |||||||| |||||||||||| ||||    
T  1800888 aattcgccatagcggctatcatagtagatttacctgttcctggaggaccataaagtaaataaccgcgtttccaagccttacc 1800807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 6971063 - 6971027
Alignment:
Q  209 tccatagcaagtgtttcaaatgttgaaggatgttcaa 245  Q
    |||||||| | ||||||||||||||||||||||||||    
T  6971063 tccatagctaatgtttcaaatgttgaaggatgttcaa 6971027  T

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