View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20003_high_23 (Length: 459)

Name: NF20003_high_23
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20003_high_23
NF20003_high_23
[»] chr3 (4 HSPs)
chr3 (131-339)||(42580558-42580765)
chr3 (339-406)||(45637565-45637632)
chr3 (361-459)||(46832213-46832306)
chr3 (370-450)||(46832310-46832389)
[»] chr7 (3 HSPs)
chr7 (338-459)||(45832867-45832988)
chr7 (80-329)||(16000072-16000320)
chr7 (80-314)||(14586271-14586503)
[»] scaffold0076 (1 HSPs)
scaffold0076 (80-329)||(1660-1908)
[»] chr8 (5 HSPs)
chr8 (206-312)||(16471048-16471154)
chr8 (206-312)||(16475619-16475725)
chr8 (209-307)||(42934780-42934878)
chr8 (193-329)||(44495233-44495368)
chr8 (209-307)||(41434918-41435016)
[»] chr1 (1 HSPs)
chr1 (206-312)||(45234687-45234793)
[»] chr2 (4 HSPs)
chr2 (206-312)||(9359083-9359193)
chr2 (362-452)||(28293482-28293571)
chr2 (193-329)||(3377143-3377278)
chr2 (359-455)||(7826068-7826163)
[»] chr6 (3 HSPs)
chr6 (363-452)||(29282787-29282875)
chr6 (359-452)||(34007584-34007676)
chr6 (375-443)||(24430636-24430703)
[»] chr4 (2 HSPs)
chr4 (193-329)||(15707086-15707221)
chr4 (359-416)||(47960502-47960558)
[»] scaffold0642 (1 HSPs)
scaffold0642 (220-329)||(3831-3940)
[»] scaffold0345 (1 HSPs)
scaffold0345 (220-329)||(13743-13852)
[»] scaffold0105 (1 HSPs)
scaffold0105 (220-329)||(25129-25238)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 131 - 339
Target Start/End: Complemental strand, 42580765 - 42580558
Alignment:
Q  131 aattgatgggcatgcaagagtttatatagaggaagaatagtaaaagcaaaagagttgattggttgatggagatatatgaaacgtcaggttaacaacggtt 230  Q
    ||||||| |||||||| ||||||||||||||| |||| |||||||| |||  |  ||||||| |||||||| || ||||||||||     ||||||||||    
T  42580765 aattgattggcatgcaggagtttatatagagggagaagagtaaaagaaaagcatctgattggatgatggaggtacatgaaacgtctaca-aacaacggtt 42580667  T
Q  231 gagatttactggggtggttggcagtttagcttagcaattaatatgggattgggagggaaattagggagagattagggcaaaggttccagctcatcaagtt 330  Q
    |||||||||| ||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42580666 gagatttacttgggtggttggcagtttaggctagcaattaatatgggattaggagggaaattagggagagattagggcaaaggtgccagctcatcaagtt 42580567  T
Q  331 gagtgttta 339  Q
    ||| |||||    
T  42580566 gagcgttta 42580558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 406
Target Start/End: Original strand, 45637565 - 45637632
Alignment:
Q  339 actagatcctcaactcatgttgtcgcacgggtcatatataatgtgtaataaaagaaagcaaaatataa 406  Q
    ||||||||| |||  | ||||||||||||||||||||||| |||| |||||||||||||  |||||||    
T  45637565 actagatccccaatccgtgttgtcgcacgggtcatatatagtgtgcaataaaagaaagccgaatataa 45637632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 459
Target Start/End: Original strand, 46832213 - 46832306
Alignment:
Q  361 tcgcacgggtcatatataatgtgtaataaaagaaagcaaaatataaacatataatatttgctgatgtcgaagaaagtcaagtacaaaataagttcaaag 459  Q
    |||||||||||||||||| |||||||||||| |||||       ||||||||||||||   || |||  ||||||||||| ||||||||||| ||||||    
T  46832213 tcgcacgggtcatatatagtgtgtaataaaataaagc-----tcaaacatataatattgattgttgttaaagaaagtcaattacaaaataagctcaaag 46832306  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 450
Target Start/End: Original strand, 46832310 - 46832389
Alignment:
Q  370 tcatatataatgtgtaataaaagaaagcaaaatataaacatataatatttgctgatgtcgaagaaagtcaagtacaaaata 450  Q
    |||||| || ||||||||| ||||||||| || || | |||| ||||||||  ||||| | ||||||||||||||||||||    
T  46832310 tcatatgtattgtgtaatataagaaagcagaagatga-cataaaatatttgtagatgtaggagaaagtcaagtacaaaata 46832389  T

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Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 338 - 459
Target Start/End: Complemental strand, 45832988 - 45832867
Alignment:
Q  338 tactagatcctcaactcatgttgtcgcacgggtcatatataatgtgtaataaaagaaagcaaaatataaacatataatatttgctgatgtcgaagaaagt 437  Q
    |||||||||| |||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45832988 tactagatccccaacccgtgctgtcgcacgggtcatatataatgtgtaataaaagaaagcaaaatataaacatataatatttgctgatgtcaaagaaagt 45832889  T
Q  438 caagtacaaaataagttcaaag 459  Q
    ||||||||||||||||||||||    
T  45832888 caagtacaaaataagttcaaag 45832867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 80 - 329
Target Start/End: Complemental strand, 16000320 - 16000072
Alignment:
Q  80 gcatcaatttccatagttgagaggtaatttgattaacgtaataagtatggcaattgatgggcatgcaagagtttatatagaggaagaatagtaaaagcaa 179  Q
    |||||| || ||||||||||||   |||||||| ||||| ||||  || ||| ||||| |||||||| | |||| |||||||| ||||||||||||||      
T  16000320 gcatcacttgccatagttgagattgaatttgatgaacgtgataaacatagcatttgataggcatgcaggcgtttttatagagggagaatagtaaaagctg 16000221  T
Q  180 aagagttgattggttgatggagatatatgaaacgtcaggttaacaacggttgagatttactggggtggttggcagtttagcttagcaattaatatgggat 279  Q
    |||| |||||||||||||| |  |||||||||||||||| ||||||||  ||||||||  ||||||||||||||| ||||| ||| |||| | ||||| |    
T  16000220 aagatttgattggttgatgaaagtatatgaaacgtcagg-taacaacgactgagatttgttggggtggttggcagattagcatagaaatttagatgggtt 16000122  T
Q  280 tgggagggaaattagggagagattagggcaaaggttccagctcatcaagt 329  Q
    | ||||||||||||||||| ||||||||| |||||  |||||||||||||    
T  16000121 taggagggaaattagggagtgattagggctaaggtgacagctcatcaagt 16000072  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 80 - 314
Target Start/End: Complemental strand, 14586503 - 14586271
Alignment:
Q  80 gcatcaatttccatagttgagaggtaatttgattaacgtaataagtatggcaattgatgggcatgcaagagtttatatagaggaagaatagtaaaagcaa 179  Q
    |||||| || ||||||||||||   |||||||| ||||| ||||| |||||| ||||| ||||||||   |||| |||||||| |||||||||||| |      
T  14586503 gcatcacttgccatagttgagattgaatttgatgaacgtgataagcatggcatttgataggcatgcagacgtttttatagagggagaatagtaaaatctg 14586404  T
Q  180 aagagttgattggttgatggagatatatgaaacgtcaggttaacaacggttgagatttactggggtggttggcagtttagcttagcaattaatatgggat 279  Q
    |||| || |||||||||||||  |||||||||||||||| ||||||||  ||||||||  | |||||||||| || ||| | ||| |||||| ||| | |    
T  14586403 aagatttaattggttgatggaagtatatgaaacgtcagg-taacaacgactgagattt-gttgggtggttggaagattaacatagaaattaagatgagtt 14586306  T
Q  280 tgggagggaaattagggagagattagggcaaaggt 314  Q
    | ||||||||||||||||| || |||||| |||||    
T  14586305 taggagggaaattagggagtgactagggctaaggt 14586271  T

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Target: scaffold0076 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 80 - 329
Target Start/End: Original strand, 1660 - 1908
Alignment:
Q  80 gcatcaatttccatagttgagaggtaatttgattaacgtaataagtatggcaattgatgggcatgcaagagtttatatagaggaagaatagtaaaagcaa 179  Q
    |||||| || ||||||||||||   |||||||| ||| | ||||| |||||| ||||| ||||||||  ||||| |||||||| ||||||||||||||      
T  1660 gcatcacttgccatagttgagattgaatttgatgaacatgataagcatggcatttgataggcatgcagaagtttttatagagggagaatagtaaaagctg 1759  T
Q  180 aagagttgattggttgatggagatatatgaaacgtcaggttaacaacggttgagatttactggggtggttggcagtttagcttagcaattaatatgggat 279  Q
    ||||  | |||||||||||||  |||||||||||| |||| |||||||| ||||||||  | ||||||||||||| ||| | |||||||||| ||||| |    
T  1760 aagatctaattggttgatggaagtatatgaaacgtgaggt-aacaacggctgagatttgttagggtggttggcagattaacatagcaattaagatgggtt 1858  T
Q  280 tgggagggaaattagggagagattagggcaaaggttccagctcatcaagt 329  Q
    | ||||||||||||||||| ||||||||| |||||  || ||||||||||    
T  1859 taggagggaaattagggagtgattagggctaaggtgacaactcatcaagt 1908  T

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Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 206 - 312
Target Start/End: Original strand, 16471048 - 16471154
Alignment:
Q  206 atgaaacgtcaggttaacaacggttgagatttactggggtggttggcagtttagcttagcaattaatatgggattgggagggaaattagggagagattag 305  Q
    ||||||||||   |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16471048 atgaaacgtcctcttaacaacggttgagatttacttgggtggttggtagtttagcttagcaattaatatgggattaggagggaaattagggagagattag 16471147  T
Q  306 ggcaaag 312  Q
    |||||||    
T  16471148 ggcaaag 16471154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 206 - 312
Target Start/End: Original strand, 16475619 - 16475725
Alignment:
Q  206 atgaaacgtcaggttaacaacggttgagatttactggggtggttggcagtttagcttagcaattaatatgggattgggagggaaattagggagagattag 305  Q
    ||||||||||   |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16475619 atgaaacgtcctcttaacaacggttgagatttacttgggtggttggtagtttagcttagcaattaatatgggattaggagggaaattagggagagattag 16475718  T
Q  306 ggcaaag 312  Q
    |||||||    
T  16475719 ggcaaag 16475725  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 209 - 307
Target Start/End: Original strand, 42934780 - 42934878
Alignment:
Q  209 aaacgtcaggttaacaacggttgagatttactggggtggttggcagtttagcttagcaattaatatgggattgggagggaaattagggagagattaggg 307  Q
    |||| ||||||  ||||||||||||||| ||| || |||||||||||| || ||||||||||||||||||||  |||||||||||||||||||||||||    
T  42934780 aaacatcaggtatacaacggttgagattaactaggatggttggcagttgagattagcaattaatatgggattaagagggaaattagggagagattaggg 42934878  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 193 - 329
Target Start/End: Complemental strand, 44495368 - 44495233
Alignment:
Q  193 ttgatggagatatatgaaacgtcaggttaacaacggttgagatttactggggtggttggcagtttagcttagcaattaatatgggattgggagggaaatt 292  Q
    ||||||||  ||||||||| || |||| |||||| | ||||||||  ||||||||||||||| ||| | |||||||||| ||||| || |||||||||||    
T  44495368 ttgatggaagtatatgaaatgtgaggt-aacaaccgctgagatttgttggggtggttggcagattaacatagcaattaagatgggtttaggagggaaatt 44495270  T
Q  293 agggagagattagggcaaaggttccagctcatcaagt 329  Q
    |||||| ||||||||| |||||  |||||||||||||    
T  44495269 agggagtgattagggctaaggtgacagctcatcaagt 44495233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 41435016 - 41434918
Alignment:
Q  209 aaacgtcaggttaacaacggttgagatttactggggtggttggcagtttagcttagcaattaatatgggattgggagggaaattagggagagattaggg 307  Q
    |||||||||||  ||||| ||||||||| ||||||  | |||||| || || |||||||||||||||||||| |||||||||||||||| |||||||||    
T  41435016 aaacgtcaggtatacaacagttgagattaactgggacgattggcaattgaggttagcaattaatatgggattaggagggaaattagggaaagattaggg 41434918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 206 - 312
Target Start/End: Complemental strand, 45234793 - 45234687
Alignment:
Q  206 atgaaacgtcaggttaacaacggttgagatttactggggtggttggcagtttagcttagcaattaatatgggattgggagggaaattagggagagattag 305  Q
    ||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  45234793 atgaaacgtcctcttaacaacggttgagatttacttgggtggttggcagtttagcttagcaattaatatgggattaggagagaaattagggagagattag 45234694  T
Q  306 ggcaaag 312  Q
    |||||||    
T  45234693 ggcaaag 45234687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 206 - 312
Target Start/End: Complemental strand, 9359193 - 9359083
Alignment:
Q  206 atgaaacgtcaggttaacaacggttgagatttact----ggggtggttggcagtttagcttagcaattaatatgggattgggagggaaattagggagaga 301  Q
    ||||||||||   ||||||||||||||||||||||     ||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||    
T  9359193 atgaaacgtcctcttaacaacggttgagatttacttgggtgggtggttggccgtttagcttaacaattaatatgggattaggagggaaattagggagaga 9359094  T
Q  302 ttagggcaaag 312  Q
    |||||||||||    
T  9359093 ttagggcaaag 9359083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 362 - 452
Target Start/End: Original strand, 28293482 - 28293571
Alignment:
Q  362 cgcacgggtcatatataatgtgtaataaaagaaagcaaaatataaacatataatatttgctgatgtcgaagaaagtcaagtacaaaataag 452  Q
    ||||||||||||||||||||||||||||||||||| | ||||| |||||||||||| ||  ||||||| ||||||||||||||||||||||    
T  28293482 cgcacgggtcatatataatgtgtaataaaagaaagtagaatat-aacatataatatatgtagatgtcggagaaagtcaagtacaaaataag 28293571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 193 - 329
Target Start/End: Complemental strand, 3377278 - 3377143
Alignment:
Q  193 ttgatggagatatatgaaacgtcaggttaacaacggttgagatttactggggtggttggcagtttagcttagcaattaatatgggattgggagggaaatt 292  Q
    ||||||||  |||||||||||| |||| |||||||| ||| ||||  |||| |||||||||| ||| | |||||||||| ||||| || |||||||||||    
T  3377278 ttgatggaattatatgaaacgtgaggt-aacaacggctgaaatttgttgggatggttggcagattaacatagcaattaagatgggtttaggagggaaatt 3377180  T
Q  293 agggagagattagggcaaaggttccagctcatcaagt 329  Q
    |||||| ||||||||| |||||  ||| |||||||||    
T  3377179 agggagtgattagggctaaggtgacagttcatcaagt 3377143  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 455
Target Start/End: Original strand, 7826068 - 7826163
Alignment:
Q  359 tgtcgcacgggtcatatataatgtgtaataaaagaaagcaaaatataaacatataatatttgctgatgtcgaagaaagtcaagtacaaaataagttc 455  Q
    ||||||||||||||| |||| |||||||||||| |||| | ||||| |||||||||||||||  ||| | | | ||||||| |||||||| ||||||    
T  7826068 tgtcgcacgggtcatttatagtgtgtaataaaataaagtagaatat-aacatataatatttgtagatattggataaagtcaggtacaaaaaaagttc 7826163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 363 - 452
Target Start/End: Complemental strand, 29282875 - 29282787
Alignment:
Q  363 gcacgggtcatatataatgtgtaataaaagaaagcaaaatataaacatataatatttgctgatgtcgaagaaagtcaagtacaaaataag 452  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||  ||||||| ||||||||||||| ||||||||    
T  29282875 gcacgggtcatatataatgtgtaataaaagaaagcagaatat-aacatataatatatgtagatgtcggagaaagtcaagtataaaataag 29282787  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 359 - 452
Target Start/End: Original strand, 34007584 - 34007676
Alignment:
Q  359 tgtcgcacgggtcatatataatgtgtaataaaagaaagcaaaatataaacatataatatttgctgatgtcgaagaaagtcaagtacaaaataag 452  Q
    |||||||||||||||||||| ||||||||||||||||||| || || |||||||||||| ||   |||||||||||||||||||||||||||||    
T  34007584 tgtcgcacgggtcatatatagtgtgtaataaaagaaagcagaaaat-aacatataatatctgtaaatgtcgaagaaagtcaagtacaaaataag 34007676  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 375 - 443
Target Start/End: Original strand, 24430636 - 24430703
Alignment:
Q  375 tataatgtgtaataaaagaaagcaaaatataaacatataatatttgctgatgtcgaagaaagtcaagta 443  Q
    |||||||||||||||||||||||| ||||| |||||||||||| ||  ||||||| |||||||||||||    
T  24430636 tataatgtgtaataaaagaaagcagaatat-aacatataatatatgtagatgtcggagaaagtcaagta 24430703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 193 - 329
Target Start/End: Complemental strand, 15707221 - 15707086
Alignment:
Q  193 ttgatggagatatatgaaacgtcaggttaacaacggttgagatttactggggtggttggcagtttagcttagcaattaatatgggattgggagggaaatt 292  Q
    ||||||||  |||||||||| | |||| |||||||| ||||||||  ||||||||||||||| ||| | |||||||||| ||||| || |||||||||||    
T  15707221 ttgatggaagtatatgaaacctgaggt-aacaacggctgagatttgttggggtggttggcagattaacatagcaattaagatgggtttaggagggaaatt 15707123  T
Q  293 agggagagattagggcaaaggttccagctcatcaagt 329  Q
    || ||| ||||||||| |||||  |||||||||||||    
T  15707122 agagagtgattagggctaaggtgacagctcatcaagt 15707086  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 47960502 - 47960558
Alignment:
Q  359 tgtcgcacgggtcatatataatgtgtaataaaagaaagcaaaatataaacatataata 416  Q
    ||||||||||||||| |||| |||||||||||| |||||| ||||| |||||||||||    
T  47960502 tgtcgcacgggtcatttatagtgtgtaataaaataaagcagaatat-aacatataata 47960558  T

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Target: scaffold0642 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 329
Target Start/End: Complemental strand, 3940 - 3831
Alignment:
Q  220 taacaacggttgagatttactggggtggttggcagtttagcttagcaattaatatgggattgggagggaaattagggagagattagggcaaaggttccag 319  Q
    ||||||||| ||||||||  |||  | |||||||| ||| | |||||||||| || || || ||||||||||||||||| ||||||||| |||||  |||    
T  3940 taacaacggctgagatttgttggattcgttggcagattaacatagcaattaagataggtttaggagggaaattagggagtgattagggctaaggtgacag 3841  T
Q  320 ctcatcaagt 329  Q
    ||||||||||    
T  3840 ctcatcaagt 3831  T

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Target: scaffold0345 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 329
Target Start/End: Complemental strand, 13852 - 13743
Alignment:
Q  220 taacaacggttgagatttactggggtggttggcagtttagcttagcaattaatatgggattgggagggaaattagggagagattagggcaaaggttccag 319  Q
    ||||||||| ||||||||  |||  | |||||||| ||| | |||||||||| || || || ||||||||||||||||| ||||||||| |||||  |||    
T  13852 taacaacggctgagatttgttggattcgttggcagattaacatagcaattaagataggtttaggagggaaattagggagtgattagggctaaggtgacag 13753  T
Q  320 ctcatcaagt 329  Q
    ||||||||||    
T  13752 ctcatcaagt 13743  T

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Target: scaffold0105 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 329
Target Start/End: Original strand, 25129 - 25238
Alignment:
Q  220 taacaacggttgagatttactggggtggttggcagtttagcttagcaattaatatgggattgggagggaaattagggagagattagggcaaaggttccag 319  Q
    ||||||||| ||||||||  |||  | |||||||| ||| | |||||||||| || || || ||||||||||||||||| ||||||||| |||||  |||    
T  25129 taacaacggctgagatttgttggattcgttggcagattaacatagcaattaagataggtttaggagggaaattagggagtgattagggctaaggtgacag 25228  T
Q  320 ctcatcaagt 329  Q
    ||||||||||    
T  25229 ctcatcaagt 25238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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