View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_26 (Length: 411)
Name: NF20003_high_26
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_26 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 8673133 - 8672873
Alignment:
| Q |
1 |
caatattttccaaagaaagcatctatctcagtagtggtatcaacagcaaacgcagatgttatttttactttttcacacgaggttcttaatctttatgagg |
100 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8673133 |
caatattttccaaagaaaacatctatctcagtaatggtatcaacagcaaacgcagatgttattttttctttttcacacgaggttcttaatctttatgagg |
8673034 |
T |
|
| Q |
101 |
accgtagacagaaattattggatcactctggatgagcttagagggccataacattagataattctgagtaattggatcattatacttccttgaaatagaa |
200 |
Q |
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| T |
8673033 |
actgtagacagaaattatcggatcactctgaatgagcttagagggccataacattagataattctgagtaattggatcgttatacttccttgaaatcgaa |
8672934 |
T |
|
| Q |
201 |
ggcatgtctaatgtctgaaacgtgttattgttcgacaccggcaagcttgtactgatgtcta |
261 |
Q |
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| T |
8672933 |
ggcatgtctaatgtctgaaacgtgttattgttcgacaccggcaagcttgtactgatgtcta |
8672873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 261 - 411
Target Start/End: Original strand, 8666249 - 8666399
Alignment:
| Q |
261 |
acatgtgaaacacaaacattaacataaacaacaatgctattagataatgataataaaactaaaggtctgcattcagcactttcaaaagcaagacatcact |
360 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8666249 |
acatgtgaaacacaaacattaacataaacttcaatgctattagataatgataataaaactaaaggtctgcattcagcactttcaaaagcaagacatcact |
8666348 |
T |
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| Q |
361 |
taaaatcttatccaagaaaaataaaattattagccttggatataaggtgtt |
411 |
Q |
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| T |
8666349 |
taaaatcttatccaagaaaaataaaattattagccttggatataaggtgtt |
8666399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 261 - 411
Target Start/End: Complemental strand, 8672407 - 8672257
Alignment:
| Q |
261 |
acatgtgaaacacaaacattaacataaacaacaatgctattagataatgataataaaactaaaggtctgcattcagcactttcaaaagcaagacatcact |
360 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8672407 |
acatgtgaaacacaaacattaacataaacttcaatgctattagataatgataataaaactaaaggtctgcattcagcactttcaaaagcaagacatcact |
8672308 |
T |
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| Q |
361 |
taaaatcttatccaagaaaaataaaattattagccttggatataaggtgtt |
411 |
Q |
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| T |
8672307 |
taaaatcttatccaagaaaaataaaattattagccttggatataaggtgtt |
8672257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 263 - 411
Target Start/End: Complemental strand, 13334701 - 13334553
Alignment:
| Q |
263 |
atgtgaaacacaaacattaacataaacaacaatgctattagataatgataataaaactaaaggtctgcattcagcactttcaaaagcaagacatcactta |
362 |
Q |
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|||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
13334701 |
atgttaaacagaaacattatcataaacttcaatgctattagataatgataataaaactaaaagtttgcattcagcactttcaaaagcaagacatcacttc |
13334602 |
T |
|
| Q |
363 |
aaatcttatccaagaaaaataaaattattagccttggatataaggtgtt |
411 |
Q |
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|||||||||| ||||||||||||||||||| ||| ||||| ||||||| |
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| T |
13334601 |
aaatcttatcacagaaaaataaaattattagtctttgatatcaggtgtt |
13334553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 263 - 411
Target Start/End: Complemental strand, 10495706 - 10495559
Alignment:
| Q |
263 |
atgtgaaacacaaacattaacataaacaacaatgctattagataatgataataaaactaaaggtctgcattcagcactttcaaaagcaagacatcactta |
362 |
Q |
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|||| ||||||||| |||| ||||||| |||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| |
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| T |
10495706 |
atgttaaacacaaatattatcataaacttcaatactattagataatgataataaaaacaaag-tctgcattcagcactttcaaaagcaagacttcacttt |
10495608 |
T |
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| Q |
363 |
aaatcttatccaagaaaaataaaattattagccttggatataaggtgtt |
411 |
Q |
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| T |
10495607 |
aaatcttatcaaagaaaaataaaattattagtcttggatataaggtgtt |
10495559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 96 - 242
Target Start/End: Original strand, 8665296 - 8665442
Alignment:
| Q |
96 |
tgaggaccgtagacagaaattattggatcactctggatgagcttagagggccataacattagataattctgagtaattggatcattatacttccttgaaa |
195 |
Q |
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||||||| |||||||||||| || |||||| || | |||||||||||||||||||||||||||| ||| ||| || |||||||| |||| |||||||| | |
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| T |
8665296 |
tgaggactgtagacagaaataataggatcattccgaatgagcttagagggccataacattagatcattgtgaatagttggatcactatagttccttgaca |
8665395 |
T |
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| Q |
196 |
tagaaggcatgtctaatgtctgaaacgtgttattgttcgacaccggc |
242 |
Q |
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| T |
8665396 |
tggaaggcatgtccaatgtctgaaacatgttattgttctacaccggc |
8665442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 261 - 409
Target Start/End: Complemental strand, 9337229 - 9337081
Alignment:
| Q |
261 |
acatgtgaaacacaaacattaacataaacaacaatgctattagataatgataataaaactaaaggtctgcattcagcactttcaaaagcaagacatcact |
360 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9337229 |
acatgtgaaacacaaacattaacataaacttcaatgctattagataatgataataaaactaaaggtctgcattcagcaatttcaaaagcaagacatcact |
9337130 |
T |
|
| Q |
361 |
taaaatcttatccaagaaaaataaaattattagccttggatataaggtg |
409 |
Q |
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| T |
9337129 |
ttaaatcttatccaagaaaaataaaattattagccttggatataaggtg |
9337081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 9337689 - 9337538
Alignment:
| Q |
88 |
aatctttatgaggaccgtagacagaaattattggatcactctggatgagcttagagggccataacattagataattctgagtaattggatcattatactt |
187 |
Q |
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||||||||||||||||| |||||||||| ||||||||| | || ||||||||| |||||||||||||||||| ||||||| |||||||||| |||| || |
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| T |
9337689 |
aatctttatgaggaccgaagacagaaataattggatcattatgaatgagcttaaagggccataacattagatcattctgaataattggatcgctatagtt |
9337590 |
T |
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| Q |
188 |
ccttgaaatagaaggcatgtctaatgtctgaaacgtgttattgttcgacacc |
239 |
Q |
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| T |
9337589 |
ccttaacatcgaaggcatgtccaatgtctgaaatatgttattgttcgacacc |
9337538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 269 - 411
Target Start/End: Complemental strand, 29214922 - 29214779
Alignment:
| Q |
269 |
aacacaaacattaacataaacaacaatgctattagataatgataataaaactaaaggtct-gcattcagcactttcaaaagcaagacatcacttaaaatc |
367 |
Q |
| |
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||||||||||||| ||||| | | |||||| |||| ||||||||||||| ||||||| | |||||||||| ||||||||||||| |||||||| ||||| |
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| T |
29214922 |
aacacaaacattatcataaccttcgatgctactagacaatgataataaaattaaaggttttgcattcagcaatttcaaaagcaaggcatcactttaaatc |
29214823 |
T |
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| Q |
368 |
ttatccaagaaaaataaaattattagccttggatataaggtgtt |
411 |
Q |
| |
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||| | ||| |||||||||||||||| ||||||||||||||||| |
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| T |
29214822 |
ttaacaaaggaaaataaaattattagtcttggatataaggtgtt |
29214779 |
T |
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