View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_27 (Length: 410)
Name: NF20003_high_27
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 3027165 - 3026774
Alignment:
| Q |
1 |
ctaaaatccctcacagtaataacagtcgacataccctcctcaaacacatctctagccttctcatgcaaacccctcctaatataatactcagcaagagaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3027165 |
ctaaaatccctcacagtaataacagtcgacataccctcctcaaacacatctctagccttctcatgcaaacccctcctaatataatactcagcaagcgaag |
3027066 |
T |
|
| Q |
101 |
tccataaccgaccaacctcatccgaaaacttcctaatcccacccctaataatggcatccacattcaaccccgacacctcattcgcatgcctagtcagcaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3027065 |
tccataaccgaccaacctcatccgaaaacttcctaatcccacccctaataatggcatccacattcaaccccgacacctcattcgcatgcctagtcagcaa |
3026966 |
T |
|
| Q |
201 |
atcacacaactccagccaaagcctatgtttcgtcttccccttaatcgaataaaatttatcatcattcaaaacagatgccaatctctcagcagactcttgc |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3026965 |
atcacacaactccaaccaaagcctatgtttcgtcttccccttaatcgaataaaatttatcatcattcaaaacagatgccaatctctcagcagactcttgc |
3026866 |
T |
|
| Q |
301 |
caaagactcgaattaatcaaaaactcaataaaatcctcaatatgattcggatcatactgcaaatacctacgataaaccctaagcgaggtttc |
392 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3026865 |
caaagactcgaattaatcaaaaactcaataaaatcctcaatatgattcggatcatactgcaaatacctacgataaaccctaagcgaggtttc |
3026774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 11217988 - 11218106
Alignment:
| Q |
1 |
ctaaaatccctcacagtaataacagtcgacataccctcctcaaacacatctctagccttctcatgcaaacccctcctaatataatactcagcaagagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||| ||| |
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| T |
11217988 |
ctaaaatccctcacagtaataacagtcgacataccctcctcaaacacatctctagccttctcgtgctaacccttcctaatataatactcagcaagcaaag |
11218087 |
T |
|
| Q |
101 |
tccataaccgaccaacctc |
119 |
Q |
| |
|
|||| |||||||||||||| |
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|
| T |
11218088 |
tccacaaccgaccaacctc |
11218106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 278 - 392
Target Start/End: Original strand, 11218099 - 11218213
Alignment:
| Q |
278 |
ccaatctctcagcagactcttgccaaagactcgaattaatcaaaaactcaataaaatcctcaatatgattcggatcatactgcaaatacctacgataaac |
377 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
11218099 |
ccaacctctcagcagactcttgccaaagacttgaattaatcaaaaactgaataaaatcctcaatatgattgggaacatactgcaaatacctacgataaac |
11218198 |
T |
|
| Q |
378 |
cctaagcgaggtttc |
392 |
Q |
| |
|
||||||||||||||| |
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|
| T |
11218199 |
cctaagcgaggtttc |
11218213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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