View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_30 (Length: 392)
Name: NF20003_high_30
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 3301906 - 3302026
Alignment:
| Q |
17 |
cagagtcggcgactactttgaaacgaatttggtggtttactccaaaaagaatatcgatattcacatgttcatgtatgttaagtatatatgcatcaaatat |
116 |
Q |
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| T |
3301906 |
cagagtcggcgactactttgaaacgaatttggtggtttactccaaaaagaatattgatattcacatgttcatgtatgttaagtatatatgcatcaaatat |
3302005 |
T |
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| Q |
117 |
gaacatacaaaaccctaaatg |
137 |
Q |
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| T |
3302006 |
gaacatacaaaaccctaaatg |
3302026 |
T |
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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 300 - 376
Target Start/End: Original strand, 3302187 - 3302263
Alignment:
| Q |
300 |
ctatgatcaaattatgtaatgtattaacagaagtaaaatcaactatatgaataagctatgaatcgaagataagaaac |
376 |
Q |
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| T |
3302187 |
ctatgatcaaattatgtaatgtattaacagaagtaaaatcaactatatgaataagctatgaatcgaagataagaaac |
3302263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 3302082 - 3302147
Alignment:
| Q |
192 |
gatcattacataattttggattcagaattgcgatttaacgtgtacataaacacaagatatagcttc |
257 |
Q |
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| T |
3302082 |
gatcattacataattttggattcagaattgcgatttaacgtgtacataaacacaggatatagcttc |
3302147 |
T |
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