View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_34 (Length: 370)
Name: NF20003_high_34
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 11035766 - 11036120
Alignment:
| Q |
1 |
cggcaacccgcgacacctagcctcgaagaaaacacatccacatcagtagcaaacctatttccaacacacaagtaccataagagaaataaagatgatgctg |
100 |
Q |
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| T |
11035766 |
cggcaacccgcgacaccgagcctcgaagaaaacacatccacatcagtagcaaacctatttccaacacacaagtaccataagagaaataaagatgatgctg |
11035865 |
T |
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| Q |
101 |
ttccagatggcgaaggcgacacgtgtgccgtgtgtttgggagattttgaggagggtgaagagttgaggactatgcctgagtgcttgcactcttttcatgt |
200 |
Q |
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| T |
11035866 |
ttccagatggcgaaggcgacacgtgtgccgtgtgtttgggagattttgaggagggtgaagagttgaggactatgcctgagtgcttacactcttttcatgt |
11035965 |
T |
|
| Q |
201 |
ttcatgtattgacatgtggcttcattcgcattcgaattgccctgtttgtcgttccagtaccgccccttcaccggcggtgaatgg---gcagcagcagcag |
297 |
Q |
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| T |
11035966 |
ttcatgtattgacatgtggcttcattcacattcgaattgccccgtttgtcgttccagtaccgccccttcaccggtggtgaatgggcagcagcagcagcag |
11036065 |
T |
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| Q |
298 |
cacaacatagatatgcctcatactaatatggttccacttgctatcatgcaaagtg |
352 |
Q |
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| T |
11036066 |
cacaacatagatatgcctcatactaatatggttccacttgctatcatgcaaagtg |
11036120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 33 - 275
Target Start/End: Original strand, 11034114 - 11034356
Alignment:
| Q |
33 |
cacatccacatcagtagcaaacctatttccaacacacaagtaccataagagaaataaagatgatgctgttccagatggcgaaggcgacacgtgtgccgtg |
132 |
Q |
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| T |
11034114 |
cacatcctcatcaatagtaaacctaattccaacacacaagtaccacaagagaaacaaaggtgacgttgttacagatgacgaaggcggcacatgtgcggtg |
11034213 |
T |
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| Q |
133 |
tgtttgggagattttgaggagggtgaagagttgaggactatgcctgagtgcttgcactcttttcatgtttcatgtattgacatgtggcttcattcgcatt |
232 |
Q |
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|||||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||| |
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| T |
11034214 |
tgtttgggagattttgaggaaggtgaggaattgaggactatgcctgagtgcttgcattcttttcatgtaaagtgtattgacatgtggctccattcgcatt |
11034313 |
T |
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| Q |
233 |
cgaattgccctgtttgtcgttccagtaccgccccttcaccggc |
275 |
Q |
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| T |
11034314 |
tgaattgccccgtttgtcgttccagtgccgccccttcgccggc |
11034356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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