View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20003_high_35 (Length: 366)

Name: NF20003_high_35
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20003_high_35
NF20003_high_35
[»] chr7 (9 HSPs)
chr7 (10-305)||(2368278-2368574)
chr7 (80-347)||(44225879-44226149)
chr7 (80-219)||(23943255-23943394)
chr7 (94-272)||(10526125-10526310)
chr7 (264-341)||(10526761-10526838)
chr7 (254-323)||(29248784-29248853)
chr7 (226-291)||(12869382-12869447)
chr7 (80-158)||(12168644-12168722)
chr7 (271-323)||(26153860-26153912)
[»] chr5 (10 HSPs)
chr5 (80-349)||(26505924-26506200)
chr5 (80-347)||(35049148-35049423)
chr5 (80-347)||(38739984-38740259)
chr5 (80-347)||(20883343-20883618)
chr5 (82-348)||(17344346-17344610)
chr5 (230-323)||(8736342-8736435)
chr5 (235-349)||(6374767-6374881)
chr5 (231-327)||(16109494-16109590)
chr5 (233-323)||(33937169-33937259)
chr5 (270-323)||(28196967-28197020)
[»] chr1 (9 HSPs)
chr1 (84-349)||(25818573-25818845)
chr1 (80-347)||(30703426-30703701)
chr1 (80-347)||(1180912-1181188)
chr1 (175-349)||(7318217-7318398)
chr1 (183-347)||(12067463-12067634)
chr1 (232-298)||(38810276-38810342)
chr1 (103-219)||(36185750-36185866)
chr1 (80-173)||(23943242-23943335)
chr1 (219-349)||(23943080-23943211)
[»] chr6 (3 HSPs)
chr6 (80-347)||(1031137-1031412)
chr6 (80-219)||(23232087-23232224)
chr6 (262-349)||(7648080-7648167)
[»] chr8 (11 HSPs)
chr8 (94-341)||(33228392-33228646)
chr8 (80-323)||(5015809-5016060)
chr8 (74-219)||(5075804-5075949)
chr8 (226-323)||(4472746-4472843)
chr8 (233-323)||(15892979-15893069)
chr8 (80-202)||(22675458-22675580)
chr8 (80-170)||(41601209-41601299)
chr8 (254-323)||(30944865-30944934)
chr8 (80-276)||(24618755-24618959)
chr8 (238-323)||(29671294-29671379)
chr8 (267-323)||(27187760-27187816)
[»] chr4 (11 HSPs)
chr4 (74-347)||(1938768-1939049)
chr4 (80-219)||(156469-156608)
chr4 (80-219)||(18486623-18486762)
chr4 (94-347)||(50334452-50334719)
chr4 (231-323)||(41784844-41784936)
chr4 (265-347)||(50006869-50006951)
chr4 (80-171)||(41420220-41420311)
chr4 (80-171)||(41784983-41785074)
chr4 (230-323)||(18777753-18777844)
chr4 (166-219)||(5534062-5534115)
chr4 (80-132)||(41785193-41785245)
[»] chr2 (9 HSPs)
chr2 (80-347)||(19379624-19379898)
chr2 (231-349)||(35004268-35004386)
chr2 (80-219)||(26224507-26224645)
chr2 (219-319)||(22728340-22728440)
chr2 (80-349)||(9827052-9827328)
chr2 (231-323)||(28758930-28759022)
chr2 (262-323)||(36342451-36342512)
chr2 (127-189)||(35004416-35004478)
chr2 (80-145)||(22728239-22728304)
[»] chr3 (4 HSPs)
chr3 (231-349)||(20514167-20514285)
chr3 (74-219)||(54336304-54336449)
chr3 (153-349)||(27934234-27934437)
chr3 (230-323)||(30531251-30531344)
[»] scaffold0015 (1 HSPs)
scaffold0015 (81-219)||(33153-33291)
[»] scaffold0070 (1 HSPs)
scaffold0070 (226-323)||(45704-45801)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 305
Target Start/End: Original strand, 2368278 - 2368574
Alignment:
Q  10 cgagatagacgcgagttccatatttatgaaggccagttatggacctgtgcaagcatgcctttccgacctttaatcacttaattacacttaataacacgta 109  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||| |||    
T  2368278 cgagatagacacgggttccatatttatgaaggccagttatggacctgtgcaagcatacctttccgacctgtaatcacttaattacacttaatgacatgta 2368377  T
Q  110 aatgatctaaattacatcaatttatccatacatttcgaaaa-ttacataatcttacctaaacggtaaaaattaaccaaatttattgttaaattacataaa 208  Q
    || |||||||||||||||||||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2368378 aacgatctaaattacatcaattttttcatacattttgaaaaattacataatcttacctaaacggtaaaaattaaccaaatttattgttaaattacataaa 2368477  T
Q  209 cacaaattcatcaacaatatgaacacaaattcgaacaaattacgatattacaagttaataaatattacatttcaatggatcggacataaatatgtaa 305  Q
    || |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  2368478 caaaaattcatcaacaatacgaacacaaattcgaacaaattacgatattacatgttaataaatattatatttcaatggatcggacataaatatgtaa 2368574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 80 - 347
Target Start/End: Complemental strand, 44226149 - 44225879
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||||||||  ||||||||| ||||||||| |||| ||||||||  ||||| | |||| ||||| ||||| ||||||||| || |||||||| |||||    
T  44226149 taatcacttaaacacacttaatgacacgtaaacgatccaaattacagaaatttgtacataaatttctaaaatcacataatctcacataaacggtcaaaat 44226050  T
Q  180 taaccaaatttattgttaaattacataaacacaaattca-------tcaacaatatgaacacaaattc-gaacaaattacgatattacaa-gttaataaa 270  Q
    || ||||||| |  |||||||||||| ||||||||||||       ||||||||| | |||||||||| ||| | |||||      |||| |||||||||    
T  44226049 tacccaaattaaacgttaaattacatcaacacaaattcattaaaattcaacaatacggacacaaattcggaaaacattac------acaacgttaataaa 44225956  T
Q  271 tattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtc 347  Q
    ||||||| ||||| |||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||| ||||    
T  44225955 tattacacttcaacggatcggacataaagatgtaaaaggttattttcaaccatcacgcgaaacatgtaatcaacgtc 44225879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 80 - 219
Target Start/End: Complemental strand, 23943394 - 23943255
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||||||||  ||||||||| ||||||||| |||| ||||||||  ||||| |||||| ||||  | ||||||||||||| || |||||||| |||||    
T  23943394 taatcacttaaacacacttaatgacacgtaaacgatccaaattacacaaatttgtccataaatttatagaattacataatctcacataaacggtcaaaat 23943295  T
Q  180 taaccaaatttattgttaaattacataaacacaaattcat 219  Q
    || ||||||  || ||||||||||||||||||||||||||    
T  23943294 tacccaaataaatcgttaaattacataaacacaaattcat 23943255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 94 - 272
Target Start/End: Original strand, 10526125 - 10526310
Alignment:
Q  94 cacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaattaaccaaatttatt 193  Q
    |||||||| ||| ||||| |||| ||||||||   |||| |||||| ||||| ||||||||||||||| || ||||||||   ||||| ||||||| ||     
T  10526125 cacttaatgacatgtaaacgatccaaattacacagatttgtccataaatttctaaaattacataatctcacataaacggttcgaattacccaaattcatc 10526224  T
Q  194 gttaaattacataaacacaaattca-------tcaacaatatgaacacaaattcgaacaaattacgatattacaagttaataaata 272  Q
    |||||||||||||||||||||||||       |||| ||||   |||||||||||| ||||||||||||||| | |||||||||||    
T  10526225 gttaaattacataaacacaaattcattaaaattcaataatacagacacaaattcgatcaaattacgatattaaacgttaataaata 10526310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 341
Target Start/End: Original strand, 10526761 - 10526838
Alignment:
Q  264 taataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatc 341  Q
    |||||||||||||| ||||| | |||||||||||| | |||||  ||||||||||||||||||| |||||||||||||    
T  10526761 taataaatattacacttcaacgaatcggacataaagaagtaaaaggttattttcaaccatcacgcgaaacatgtaatc 10526838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 29248784 - 29248853
Alignment:
Q  254 tattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccat 323  Q
    ||||||| ||| |||||||||||| ||||||||||| |||||||| ||| ||| ||||||||||||||||    
T  29248784 tattacacgttcataaatattacacttcaatggatcagacataaagatgcaaaatgttattttcaaccat 29248853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 12869447 - 12869382
Alignment:
Q  226 tatgaacacaaattcgaacaaattacgatattacaagttaataaatattacatttcaatggatcgg 291  Q
    |||| |||||||||| |||| |||||  ||||||  |||||||||||||||| |||||||||||||    
T  12869447 tatggacacaaattcaaacacattacactattacgcgttaataaatattacacttcaatggatcgg 12869382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 12168644 - 12168722
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataa 158  Q
    |||||||||||||||||||||| ||||||||| ||||  |||| || |||||| ||| || |||||  |||| ||||||    
T  12168644 taatcacttaattacacttaatgacacgtaaacgatcctaattgcaccaatttgtccttaaatttcctaaatcacataa 12168722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 26153912 - 26153860
Alignment:
Q  271 tattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccat 323  Q
    ||||||| |||||||||||||||||||| |  |||| ||||||||| ||||||    
T  26153912 tattacacttcaatggatcggacataaagagataaaatgttattttgaaccat 26153860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 80 - 349
Target Start/End: Original strand, 26505924 - 26506200
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||||||||| ||||||||| ||| ||||| |||| |||||||| |||||| ||| || |||| |||||||||||||||| || |||||||||||||     
T  26505924 taatcacttaatcacacttaatgacatgtaaacgatccaaattacaccaatttgtccttaaattttgaaaattacataatctcacataaacggtaaaaaa 26506023  T
Q  180 taaccaaatttattgttaaattacataaacacaaattcat-------caacaatatgaacacaaattcgaacaaattacgatattacaagttaataaata 272  Q
    ||  |||||| || ||||||| ||||||||||||||||||       |||||||| | | |||||||||||||||||||  ||||||| |||||||||||    
T  26506024 tacacaaattcatcgttaaataacataaacacaaattcattaaaattcaacaatacggatacaaattcgaacaaattacactattacatgttaataaata 26506123  T
Q  273 ttacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtcgc 349  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||  |||||||||| || ||||||    
T  26506124 ttacatttcaaaagatcggacataaagatgtaaagtgttattttcaaccatcacgctaaacatgtaagcaacgtcgc 26506200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 80 - 347
Target Start/End: Original strand, 35049148 - 35049423
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||||||||  ||||||||| ||||||||| |||| ||||||||  ||||| |||||| ||||| ||||||||||||||| || |||||||| |||||    
T  35049148 taatcacttaaacacacttaatgacacgtaaacgatccaaattacacaaatttgtccataaatttctaaaattacataatctcacataaacggtcaaaat 35049247  T
Q  180 taaccaaatttattgttaaattacataaacacaaattca-------tcaacaatatgaacacaaattc-gaacaaattacgatattacaagttaataaat 271  Q
    || ||||||| || |||||||||||| ||||||||||||       ||||||||| | |||||||||| ||| | |||||  |||||||  |||||||||    
T  35049248 tacccaaattcatcgttaaattacatcaacacaaattcattaaaattcaacaatacggacacaaattcggaaaacattacactattacacattaataaat 35049347  T
Q  272 attacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtc 347  Q
    |||||| ||||| |||||||||||||| |||||||   |||||||||||||||||| |||||||||||||| ||||    
T  35049348 attacacttcaacggatcggacataaagatgtaaaagattattttcaaccatcacgcgaaacatgtaatcaacgtc 35049423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 80 - 347
Target Start/End: Complemental strand, 38740259 - 38739984
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||||||||  ||||||||| ||||||||| |||| ||||||||  ||||| |||||| ||||| ||||||||||||||| || |||||||| |||||    
T  38740259 taatcacttaaacacacttaatgacacgtaaacgatccaaattacacaaatttgtccataaatttctaaaattacataatctcacataaacggtcaaaat 38740160  T
Q  180 taaccaaatttattgttaaattacataaacacaaattca-------tcaacaatatgaacacaaattc-gaacaaattacgatattacaagttaataaat 271  Q
    || ||||||| || |||||||||||||||||| ||||||       ||||||||| | |||||||||| ||| | |||||  ||||||| ||||||||||    
T  38740159 tacccaaattcatcgttaaattacataaacacgaattcattaaaattcaacaatacggacacaaattcggaaaacattacactattacacgttaataaat 38740060  T
Q  272 attacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtc 347  Q
    |||| | ||||| |||||||||||||| |||||||   |||||||||||||||||  |||||||||||||| ||||    
T  38740059 attagacttcaacggatcggacataaagatgtaaaagattattttcaaccatcacacgaaacatgtaatcaacgtc 38739984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 80 - 347
Target Start/End: Original strand, 20883343 - 20883618
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||||||||  ||||||||| |||||||||  ||| ||||||||  ||||| |||||| ||||| |||| |||||||||| || | |||||| |||||    
T  20883343 taatcacttaaacacacttaatgacacgtaaacaatccaaattacacaaatttgtccataaatttctaaaaatacataatctcacatgaacggtcaaaat 20883442  T
Q  180 taaccaaatttattgttaaattacataaacacaaattca-------tcaacaatatgaacacaaattc-gaacaaattacgatattacaagttaataaat 271  Q
    || ||||||| || |||||||||||| ||||||||||||       |||||||||   |||||||||| ||| | |||||| ||||||| ||||||||||    
T  20883443 tacccaaattcatcgttaaattacatcaacacaaattcattaaaattcaacaatacagacacaaattcggaaaacattacgctattacacgttaataaat 20883542  T
Q  272 attacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtc 347  Q
    |||| ||||||| |||| ||||||||| |||||||  |||||||||||||||| || |||||||||||||| ||||    
T  20883543 attaaatttcaacggattggacataaagatgtaaaaggttattttcaaccatctcgcgaaacatgtaatcaacgtc 20883618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 82 - 348
Target Start/End: Complemental strand, 17344610 - 17344346
Alignment:
Q  82 atcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaatta 181  Q
    |||||||||| ||||||||  ||||||||| |||| |||||||| | |||||||||||         ||||||||||||| || |||| ||| |||||||    
T  17344610 atcacttaatcacacttaacgacacgtaaacgatccaaattacacctatttatccata---------aattacataatctcacataaatggtcaaaatta 17344520  T
Q  182 accaaatttattgttaaattacataaacacaaattcat-------caacaatatgaacacaaattcgaacaaattacgatattacaagttaataaatatt 274  Q
      |||||| || ||||||||| |||| |||||||||||       ||||||||   |||||||||||||||||||||||||||||| |||||||||||||    
T  17344519 cacaaattcatcgttaaattatataaccacaaattcattaaaattcaacaatacagacacaaattcgaacaaattacgatattacacgttaataaatatt 17344420  T
Q  275 acatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtcg 348  Q
    ||| ||||||||||| ||| |||| ||  |||||||||||||||||||||||  |||||||||||||| |||||    
T  17344419 acacttcaatggatcagacgtaaagattcaaagtgttattttcaaccatcacacgaaacatgtaatcagcgtcg 17344346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 8736342 - 8736435
Alignment:
Q  230 aacacaaattcgaacaaattacgatattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccat 323  Q
    |||||||||||||||  |||||  ||||||| |||||||||||||||| ||| ||| ||| |||||||| ||||||| ||||||||||||||||    
T  8736342 aacacaaattcgaacgcattacattattacacgttaataaatattacacttcgatgaatcagacataaaaatgtaaaatgttattttcaaccat 8736435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 349
Target Start/End: Complemental strand, 6374881 - 6374767
Alignment:
Q  235 aaattcgaacaaattacgatattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaaca 334  Q
    ||||||||||| |||||  |||||||  ||||||||||||||| ||||| ||||| |||||||| ||||||| | ||||||| |||||| |    |||||    
T  6374881 aaattcgaacacattacactattacacattaataaatattacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaaca 6374782  T
Q  335 tgtaatcatcgtcgc 349  Q
    |||||||| ||||||    
T  6374781 tgtaatcaacgtcgc 6374767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 16109590 - 16109494
Alignment:
Q  231 acacaaattcgaacaaattacgatattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacg 327  Q
    ||||||||||||| | |||||   ||||||  ||||||||||||||| ||||| ||||| |||||||| ||| ||| ||||||| ||||||||||||    
T  16109590 acacaaattcgaaaacattacacaattacactttaataaatattacacttcaacggatcagacataaagatggaaaatgttattctcaaccatcacg 16109494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 33937259 - 33937169
Alignment:
Q  233 acaaattcgaacaaattacgatattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccat 323  Q
    ||||||| ||||| |||||  ||||||| |||||||||||||||| |||||| || || ||||||| | ||||| | ||||||||||||||    
T  33937259 acaaatttgaacacattacactattacatgttaataaatattacacttcaatagaccgaacataaagaagtaaaatattattttcaaccat 33937169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 28197020 - 28196967
Alignment:
Q  270 atattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccat 323  Q
    |||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||    
T  28197020 atattacacttcaatggatcagacacaaatatgtaaaatgttattttcaaccat 28196967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 84 - 349
Target Start/End: Complemental strand, 25818845 - 25818573
Alignment:
Q  84 cacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaattaac 183  Q
    |||||||  ||||||||| ||||||||| |||| |||||||| |||||| |||||| ||||  ||||||||||||||| || |||||  | ||||||| |    
T  25818845 cacttaaacacacttaatgacacgtaaacgatccaaattacaccaatttgtccataaatttttaaaattacataatctcacgtaaactatcaaaattacc 25818746  T
Q  184 caaatttattgttaaattacataaacacaaattcat-------caacaatatgaacacaaattcgaacaaattacgatattacaagttaataaatattac 276  Q
    |||||| || ||||||||||||||||||||||||||       ||| |||| | |||||||||||||||||||||||||||| | |||||||||||| ||    
T  25818745 caaattcatcgttaaattacataaacacaaattcattaaaattcaataatacggacacaaattcgaacaaattacgatattaaacgttaataaatatcac 25818646  T
Q  277 atttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtcgc 349  Q
    | ||||| |||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||| ||||||    
T  25818645 acttcaacggatcggacataaagatgtaaaaggttattttcaaccatcacgcgaaacatgtaatcaacgtcgc 25818573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 80 - 347
Target Start/End: Original strand, 30703426 - 30703701
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||||||||  ||||||||| ||| ||||| |||| ||||||||  ||||| | |||||||||| ||||||||||||||| || |||||||| |||||    
T  30703426 taatcacttaaacacacttaatgacatgtaaacgatccaaattacacaaatttttacatacatttctaaaattacataatctcacataaacggtcaaaat 30703525  T
Q  180 taaccaaatttattgttaaattacataaacacaaattca-------tcaacaatatgaacacaaatt-cgaacaaattacgatattacaagttaataaat 271  Q
    || ||||||| || |||||||||||| ||||||||||||       ||||||||| | |||||||||  ||| | |||||  |||| ||  |||||||||    
T  30703526 tacccaaattcatcgttaaattacatcaacacaaattcattaaaattcaacaatacggacacaaattaggaaaacattacactattgcacattaataaat 30703625  T
Q  272 attacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtc 347  Q
    |||||| ||||| ||||| |||||||| |||||||  ||||||||||| ||||||| |||||||||||||| ||||    
T  30703626 attacacttcaacggatcagacataaagatgtaaaaggttattttcaaacatcacgcgaaacatgtaatcaacgtc 30703701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 80 - 347
Target Start/End: Complemental strand, 1181188 - 1180912
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||||||||  ||||||||| |||| |||| |||| ||||||||  ||||| |||||| ||||| ||||||||||||||| |  |||||||| |||||    
T  1181188 taatcacttaaacacacttaatgacacataaacgatccaaattacacaaatttgtccataaatttctaaaattacataatctcatataaacggtcaaaat 1181089  T
Q  180 taaccaaatttattgttaaattacataaacacaaattca-------tcaacaatatgaacacaaattcgaacaa-attacgatattacaagttaat-aaa 270  Q
    || ||||||| || |||||||||||| ||||||| ||||       |||||||||   ||||||||||||| || |||||  ||||||| |||||| |||    
T  1181088 tacccaaattcatcgttaaattacatcaacacaagttcattaaaattcaacaatacagacacaaattcgaaaaacattacactattacacgttaataaaa 1180989  T
Q  271 tattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtc 347  Q
    ||||||| ||||| |||||||||||||| |||||||  |||||||||||| |||||  |||||||||||||| ||||    
T  1180988 tattacacttcaacggatcggacataaagatgtaaaaggttattttcaacaatcacacgaaacatgtaatcaacgtc 1180912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 175 - 349
Target Start/End: Original strand, 7318217 - 7318398
Alignment:
Q  175 aaaattaaccaaatttattgttaaattacataaacacaaattcat-------caacaatatgaacacaaattcgaacaaattacgatattacaagttaat 267  Q
    ||||||| ||||||| || |||||||||||||||||||||||| |       |||||||| | ||||||||| |||||||||||  ||||||| ||||||    
T  7318217 aaaattacccaaattcatcgttaaattacataaacacaaattctttaaaattcaacaatacggacacaaatttgaacaaattacactattacacgttaat 7318316  T
Q  268 aaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtcgc 349  Q
    |||||||||| |||||   ||| |||||||| |||||||| |||||||||||||||||||  ||||| |||| || ||||||    
T  7318317 aaatattacacttcaacatatctgacataaagatgtaaagcgttattttcaaccatcacgctaaacacgtaagcaacgtcgc 7318398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 183 - 347
Target Start/End: Complemental strand, 12067634 - 12067463
Alignment:
Q  183 ccaaatttattgttaaattacataaacacaaattcat-------caacaatatgaacacaaattcgaacaa-attacgatattacaagttaataaatatt 274  Q
    ||||||| || |||||||||||| | |||||||||||       |||||||| | ||||||||||| | || |||||  ||||||| |||||||||||||    
T  12067634 ccaaattcatcgttaaattacatcagcacaaattcattaaaattcaacaatacggacacaaattcggaaaacattacactattacacgttaataaatatt 12067535  T
Q  275 acatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtc 347  Q
    ||| ||||| | ||| |||||||| |||||||  ||||||||||||||||||| |||||||||||||| ||||    
T  12067534 acacttcaacg-atcagacataaagatgtaaaaggttattttcaaccatcacgcgaaacatgtaatcaacgtc 12067463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 298
Target Start/End: Original strand, 38810276 - 38810342
Alignment:
Q  232 cacaaattcgaacaaattacgatattacaagttaataaatattacatttcaatggatcggacataaa 298  Q
    |||||||||||||| |||||  ||||||| |||| | ||||||||| ||||||||||||||||||||    
T  38810276 cacaaattcgaacacattacactattacatgttactcaatattacacttcaatggatcggacataaa 38810342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 36185750 - 36185866
Alignment:
Q  103 acacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaattaaccaaatttattgttaaatta 202  Q
    ||||||||| |||| ||||||||  ||||| |||||| ||| | ||||| ||||||| | || |||||||| ||  ||| ||||||| || |||||||||    
T  36185750 acacgtaaacgatccaaattacacaaatttgtccataaattcctaaaatgacataatttgacataaacggtcaattttacccaaattcatcgttaaatta 36185849  T
Q  203 cataaacacaaattcat 219  Q
    ||||| || ||||||||    
T  36185850 cataagcataaattcat 36185866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 23943335 - 23943242
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggt 173  Q
    |||||||||||  ||||||||| ||||||||  |||| |||||||   ||||| |||||| ||||  ||||||||||||||| || ||||||||    
T  23943335 taatcacttaaacacacttaatgacacgtaagcgatccaaattacgcaaatttgtccataaatttataaaattacataatctcacataaacggt 23943242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 349
Target Start/End: Complemental strand, 23943211 - 23943080
Alignment:
Q  219 tcaacaatatgaacacaaattcgaacaa-attacgatattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttc 317  Q
    ||||||||| | ||||||||||||| || |||||  |||||||  | |||||  |||||| ||||| |||||||||| ||| ||  ||||||||||| ||    
T  23943211 tcaacaatacggacacaaattcgaaaaacattacactattacacttaaataatgattacacttcaacggatcggacaaaaagatacaaagtgttattctc 23943112  T
Q  318 aaccatcacgtgaaacatgtaatcatcgtcgc 349  Q
    |||||| ||   ||||||| ||||| ||||||    
T  23943111 aaccattaccctaaacatgaaatcaacgtcgc 23943080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 80 - 347
Target Start/End: Complemental strand, 1031412 - 1031137
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||| ||||  ||||||||| ||||||||| |||| ||||||||  ||||| |||||| ||||| ||||||||||||||| || |||||||| |||||    
T  1031412 taatcatttaaacacacttaatgacacgtaaacgatccaaattacacaaatttgtccataaatttctaaaattacataatctcacataaacggtcaaaat 1031313  T
Q  180 taaccaaatttattgttaaattacataaacacaaattca-------tcaacaatatgaacacaaattc-gaacaaattacgatattacaagttaataaat 271  Q
    || ||||||| || |||||||||||| ||||||||||||       ||||| ||| | |||||||||| ||| | |||||  ||||||| ||||||||||    
T  1031312 tacccaaattcatcgttaaattacatcaacacaaattcattaaaattcaacgatacggacacaaattcggaaaacattacactattacacgttaataaat 1031213  T
Q  272 attacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtc 347  Q
    |||||| ||||| | |||||||||||| |||||||  ||||||||||||||||||| |||||||||||||| ||||    
T  1031212 attacacttcaacgcatcggacataaagatgtaaaaggttattttcaaccatcacgcgaaacatgtaatcaacgtc 1031137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 219
Target Start/End: Complemental strand, 23232224 - 23232087
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||||||||  ||||| ||| |||||| || |||| ||||||||  ||||| |||||| ||||| ||||| ||||||||| || ||||| || ||  |    
T  23232224 taatcacttaaacacactaaatgacacgtcaacgatccaaattacacaaatttgtccataaatttctaaaatgacataatctgacataaacagtcaattt 23232125  T
Q  180 taaccaaatttattgttaaattacataaacacaaattcat 219  Q
    || ||  ||| || |||||||||||||| |||||||||||    
T  23232124 taccc--attcatcgttaaattacataagcacaaattcat 23232087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 7648080 - 7648167
Alignment:
Q  262 gttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtcgc 349  Q
    |||||||||||||||| ||||||||| || |||  ||||| |||| |||||||||||| ||| |    ||||||||||||| ||||||    
T  7648080 gttaataaatattacacttcaatggagcgaacacgaatatataaaatgttattttcaagcattaacctaaacatgtaatcaacgtcgc 7648167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 94 - 341
Target Start/End: Complemental strand, 33228646 - 33228392
Alignment:
Q  94 cacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaattaaccaaatttatt 193  Q
    |||||||| ||| ||||| |||| ||||||||  ||||| |||||| ||||| ||||||||||||||| || ||||||||  |||||| ||||||| ||     
T  33228646 cacttaatgacatgtaaacgatccaaattacacaaatttgtccataaatttctaaaattacataatctcacataaacggttcaaattacccaaattcatc 33228547  T
Q  194 gttaaattacataaacacaaattcat-------caacaatatgaacacaaattcgaacaaattacgatattacaagttaataaatattacatttcaatgg 286  Q
    ||||||||||||||||||||||||||       ||| ||||   ||||||||||||  |||||||||||||| | |||||||||||||| | |||||  |    
T  33228546 gttaaattacataaacacaaattcattaaaattcaataatacagacacaaattcgagaaaattacgatattaaatgttaataaatattagacttcaacag 33228447  T
Q  287 atcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatc 341  Q
    ||||||| |||| ||||||| |||||||||||||||||||| |||||||||||||    
T  33228446 atcggacgtaaagatgtaaaatgttattttcaaccatcacgcgaaacatgtaatc 33228392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 323
Target Start/End: Original strand, 5015809 - 5016060
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||||||||  ||||||||| ||||||||| |||| ||||||||  ||||| | |||| ||||  ||||||| ||||||| || |||||||| |||||    
T  5015809 taatcacttaaacacacttaatgacacgtaaacgatccaaattacacaaatttgtacataaatttataaaattaaataatctcacataaacggtcaaaat 5015908  T
Q  180 taaccaaatttattgttaaattacataaacacaaattca-------tcaacaatatgaacacaaattc-gaacaaattacgatattacaagttaataaat 271  Q
    || ||||||| || ||||||||||| |||||||||||||       ||||||||| | |||||||||| ||| | |||||  | |||||  | |||||      
T  5015909 tacccaaattcatcgttaaattacacaaacacaaattcattaaaattcaacaatacggacacaaattcggaaaatattacactgttacacttaaataatg 5016008  T
Q  272 attacatttcaatggatcggacataaatatgtaaagtgttattttcaaccat 323  Q
    |||||| ||||| |||||||||| ||| ||  ||||||||||| ||||||||    
T  5016009 attacacttcaacggatcggacaaaaagatacaaagtgttattctcaaccat 5016060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 74 - 219
Target Start/End: Complemental strand, 5075949 - 5075804
Alignment:
Q  74 gacctttaatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggt 173  Q
    ||||| |||| ||||||  ||||||||| ||||||||| |||| ||||||||| ||| | |||||| ||||  ||||||||||||| | || ||||||||    
T  5075949 gacctgtaatgacttaaaaacacttaatgacacgtaaacgatccaaattacataaatatgtccataaatttataaaattacataatatcacataaacggt 5075850  T
Q  174 aaaaattaaccaaatttattgttaaattacataaacacaaattcat 219  Q
     ||||||| ||||||| || ||||||||||||||||| ||||||||    
T  5075849 caaaattacccaaattcatcgttaaattacataaacataaattcat 5075804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 226 - 323
Target Start/End: Original strand, 4472746 - 4472843
Alignment:
Q  226 tatgaacacaaattcgaacaaattacgatattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccat 323  Q
    |||||||||||||| ||||| |||||  ||||||| |||||||||||||||| ||||||||||| |||| ||| ||||||| ||||||||||||||||    
T  4472746 tatgaacacaaatttgaacacattacactattacacgttaataaatattacacttcaatggatcagacacaaagatgtaaaatgttattttcaaccat 4472843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 15892979 - 15893069
Alignment:
Q  233 acaaattcgaacaaattacgatattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccat 323  Q
    |||||||| |||| |||||  ||||||| |||||||||||||||| ||||| ||||| |||||||| ||||||| ||||||||||||||||    
T  15892979 acaaattcaaacacattacactattacacgttaataaatattacacttcaacggatcagacataaagatgtaaaatgttattttcaaccat 15893069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 22675580 - 22675458
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||||||||  ||||||||| |||| |||| ||||  |||| ||  ||||| |||||| ||||| ||||||||||||| | || |||||||| |||||    
T  22675580 taatcacttaaacacacttaatgacacataaacgatccgaattgcacaaatttttccataaatttctaaaattacataatatcacataaacggtcaaaat 22675481  T
Q  180 taaccaaatttattgttaaatta 202  Q
    || ||||||| || |||||||||    
T  22675480 tacccaaattcatcgttaaatta 22675458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 41601299 - 41601209
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaac 170  Q
    |||||||||||  ||||||||| ||||||||| |||| ||||||||  |||||||||||| ||||| ||||||| ||||||| || |||||    
T  41601299 taatcacttaaacacacttaatgacacgtaaacgatccaaattacacaaatttatccataaatttctaaaattatataatctcacataaac 41601209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 30944934 - 30944865
Alignment:
Q  254 tattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccat 323  Q
    ||||||| ||| |||||||||||| ||||||||||| |||||||| ||| ||| ||||||||||||||||    
T  30944934 tattacacgttcataaatattacacttcaatggatcagacataaagatgcaaaatgttattttcaaccat 30944865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 276
Target Start/End: Original strand, 24618755 - 24618959
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||||||||| ||| ||||| |||| ||||  ||| |||||||| |||||  ||| |||||||| ||||| ||||||||  || |||||| |  ||||    
T  24618755 taatcacttaatcacagttaatgacacataaactatccaaattacaccaattcgtccttacatttccaaaatcacataatcacacataaacgatccaaat 24618854  T
Q  180 taaccaaatttattgttaaattacata-aacacaaattca-------tcaacaatatgaacacaaattcgaacaaattacgatattacaagttaataaat 271  Q
    ||  ||||||  | ||||||||||| | ||||||||||||       |||||| ||   ||||||||||||||| |||||  ||||||| |||||| |||    
T  24618855 tacacaaattcgtcgttaaattacacataacacaaattcattaaaattcaacattacagacacaaattcgaacacattacactattacacgttaatgaat 24618954  T
Q  272 attac 276  Q
    |||||    
T  24618955 attac 24618959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 29671379 - 29671294
Alignment:
Q  238 ttcgaacaaattacgatattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccat 323  Q
    |||||||| |||||  ||||| | ||||||| |||||||| |||||||||||  ||||||| |||||||   ||||||| ||||||    
T  29671379 ttcgaacacattacactattatacgttaatatatattacacttcaatggatcaaacataaagatgtaaaaatttatttttaaccat 29671294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 27187760 - 27187816
Alignment:
Q  267 taaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccat 323  Q
    ||||||||| | || ||||||||| ||||||| | ||||| ||||||||||||||||    
T  27187760 taaatattagactttaatggatcgaacataaagacgtaaaatgttattttcaaccat 27187816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 74 - 347
Target Start/End: Complemental strand, 1939049 - 1938768
Alignment:
Q  74 gacctttaatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggt 173  Q
    ||||| |||||||||||  ||| ||||| ||||||||| |||| |||||| |  ||||| |||||| ||||| ||||||||||||||| || |||||||     
T  1939049 gacctgtaatcacttaaacacatttaatgacacgtaaacgatccaaattatacaaatttgtccataaatttctaaaattacataatctcacataaacggc 1938950  T
Q  174 aaaaattaaccaaatttattgttaaattacataaacacaaattcat-------caacaatatgaacacaaattcgaacaa-attacgatattacaagtta 265  Q
     |||||||  |||||| || |||||||||||| |||||||||||||       ||||||||   ||||||||||| | || |||||  ||||| | ||||    
T  1938949 caaaattactcaaattcatcgttaaattacatcaacacaaattcattaaaattcaacaatacagacacaaattcggaaaacattacactattatatgtta 1938850  T
Q  266 ataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtc 347  Q
    |||||||||||| |||||||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||| ||||    
T  1938849 ataaatattacacttcaatggatcggacataaagatgtaaaaggttattttcaaccatcacgcgaaacatgtaatcaacgtc 1938768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 80 - 219
Target Start/End: Original strand, 156469 - 156608
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||||||||  |||||| || ||||||||| |||| ||||||||  ||||| |||||| ||||  |||||||||||||||||| ||||||||||||||    
T  156469 taatcacttaaacacacttgatgacacgtaaacgatccaaattacacaaatttgtccataaatttataaaattacataatcttacataaacggtaaaaat 156568  T
Q  180 taaccaaatttattgttaaattacataaacacaaattcat 219  Q
     | ||||||| || ||||||||||||||||||||||||||    
T  156569 cacccaaattcatcgttaaattacataaacacaaattcat 156608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 80 - 219
Target Start/End: Complemental strand, 18486762 - 18486623
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||||||||  ||||||||| ||||||||| |||| ||||||||  ||||| ||| || ||||| ||||| ||||||||| || |||||||| ||  |    
T  18486762 taatcacttaaacacacttaatgacacgtaaacgatccaaattacacaaatttgtccttaaatttctaaaatgacataatctgacataaacggtcaattt 18486663  T
Q  180 taaccaaatttattgttaaattacataaacacaaattcat 219  Q
    || ||||||| || ||||||||||||||||||||||||||    
T  18486662 tacccaaattcatcgttaaattacataaacacaaattcat 18486623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 94 - 347
Target Start/End: Original strand, 50334452 - 50334719
Alignment:
Q  94 cacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaattaaccaaatttatt 193  Q
    |||||||  ||||||||| |||| ||||||||  ||||| |||||| |||||  ||||||||||||||    ||||| || | ||||| ||||||| |||    
T  50334452 cacttaaacacacgtaaacgatccaaattacacaaatttgtccataaatttctcaaattacataatctcttataaacagtcagaattacccaaattcatt 50334551  T
Q  194 gttaaattacataaacacaaattca-------tcaacaatatgaacacaaattcgaacaa-attac------gatattacaagttaataaatattacatt 279  Q
    |||||||||||| ||||||||||||       |||||||||   ||||||||||||| || |||||        |||||||  ||||||||||| ||| |    
T  50334552 gttaaattacatcaacacaaattcattaaaattcaacaatacagacacaaattcgaaaaacattacactattactattacacattaataaatataacact 50334651  T
Q  280 tcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtc 347  Q
    ||||  |||| |||||||| |||||||  ||||||||||||||||||| |||||||||||||| ||||    
T  50334652 tcaacagatcagacataaagatgtaaaaagttattttcaaccatcacgcgaaacatgtaatcaacgtc 50334719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 41784936 - 41784844
Alignment:
Q  231 acacaaattcgaacaaattacgatattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccat 323  Q
    ||||||||||||||| |||||  ||||||| ||| |||||||||||| ||||||||||| |||||||| ||||||| ||||||||||||||||    
T  41784936 acacaaattcgaacacattacactattacacgttcataaatattacacttcaatggatcagacataaagatgtaaaatgttattttcaaccat 41784844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 265 - 347
Target Start/End: Original strand, 50006869 - 50006951
Alignment:
Q  265 aataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtc 347  Q
    ||||||||||||| ||||| |||||||||||||| |||||||  ||||||||||||||||||| ||||| |||||||| ||||    
T  50006869 aataaatattacacttcaacggatcggacataaagatgtaaaaggttattttcaaccatcacgggaaacttgtaatcaacgtc 50006951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 41420311 - 41420220
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacg 171  Q
    |||||||||||  ||||||||| ||||||||| |||| ||||||||  ||||| |||||| ||||  ||||||||||||||| || ||||||    
T  41420311 taatcacttaaacacacttaatgacacgtaaacgatccaaattacacaaatttgtccataaatttataaaattacataatctcacataaacg 41420220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 41785074 - 41784983
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacg 171  Q
    ||||||| |||| ||||||||| |||| ||||||||||||||||||||||||| ||| || |||   ||||| ||||||||| || ||||||    
T  41785074 taatcacataatcacacttaatgacacataaatgatctaaattacatcaatttgtccttaaattctcaaaatcacataatctcacataaacg 41784983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 18777844 - 18777753
Alignment:
Q  230 aacacaaattcgaacaaattacgatattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccat 323  Q
    |||||| ||||||||| |||||  | ||||| ||||||| |||||||||||||||||| | || | ||| ||||||  |||||||| |||||||    
T  18777844 aacacatattcgaacatattacacttttacacgttaatacatattacatttcaatggagcagaaacaaagatgtaa--tgttatttgcaaccat 18777753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 5534062 - 5534115
Alignment:
Q  166 taaacggtaaaaattaaccaaatttattgttaaattacataaacacaaattcat 219  Q
    |||||||| ||||||| ||||||| || ||||| |||||| |||||||||||||    
T  5534062 taaacggtcaaaattatccaaattcatcgttaatttacatcaacacaaattcat 5534115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 41785245 - 41785193
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaattt 132  Q
    |||||||||||| ||| ||||| ||||||||| |||| ||||||||| |||||    
T  41785245 taatcacttaatcacaattaatgacacgtaaacgatccaaattacatgaattt 41785193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 80 - 347
Target Start/End: Complemental strand, 19379898 - 19379624
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||||||||  ||||||||| ||| ||||  |||| ||||||||  ||||| |||||| ||||| ||||||||||||||| ||  ||||||| |||||    
T  19379898 taatcacttaaacacacttaatgacaagtaac-gatccaaattacacaaatttgtccataaatttctaaaattacataatctcacacaaacggtcaaaat 19379800  T
Q  180 taaccaaatttattgttaaattacataaacacaaattca-------tcaacaatatgaacacaaattc-gaacaaattacgatattacaagttaataaat 271  Q
    || ||||||| || |||||||||||| ||||||||||||       |||||||||   |||||||||| ||| | |||||  ||||||| ||||| ||||    
T  19379799 tacccaaattcatcgttaaattacatcaacacaaattcattaaaattcaacaatacagacacaaattcggaaaatattacactattacacgttaaaaaat 19379700  T
Q  272 attacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtc 347  Q
     ||||| ||||| |||||||||||||| |||||||  ||||||||||| ||||||| |||||||||||||| ||||    
T  19379699 gttacacttcaacggatcggacataaagatgtaaaaggttattttcaagcatcacgcgaaacatgtaatcaacgtc 19379624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 349
Target Start/End: Complemental strand, 35004386 - 35004268
Alignment:
Q  231 acacaaattcgaacaaattacgatattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtga 330  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||| |||||  ||||||||||||| ||||| | ||||||| |||||||||||| ||    
T  35004386 acacaaattcgaataaattacgatattacacgttaataaatattacacttcaacagatcggacataaagatgtagaatgttattctcaaccatcacgcga 35004287  T
Q  331 aacatgtaatcatcgtcgc 349  Q
    |||||||||||| ||||||    
T  35004286 aacatgtaatcaacgtcgc 35004268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 80 - 219
Target Start/End: Original strand, 26224507 - 26224645
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||||||||  ||||||||| ||||||||| |||| |||||||| |||||| |||||| ||||  |||| |||||||||| || |||| ||| |||||    
T  26224507 taatcacttaaacacacttaatgacacgtaaacgatccaaattacaccaatttgtccataaatttataaaaatacataatctcacataaa-ggtcaaaat 26224605  T
Q  180 taaccaaatttattgttaaattacataaacacaaattcat 219  Q
    || ||||||| |||||||||||||||||||||||||||||    
T  26224606 tacccaaattcattgttaaattacataaacacaaattcat 26224645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 219 - 319
Target Start/End: Original strand, 22728340 - 22728440
Alignment:
Q  219 tcaacaatatgaacacaaattcgaacaaattacgatattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttca 318  Q
    |||| |||| ||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||    
T  22728340 tcaaaaatacgaacacaaattcgaacaaaatacaatattacacgttaataaatattacacttcaacggatcggacataaagatgtaaaatgttattttca 22728439  T
Q  319 a 319  Q
    |    
T  22728440 a 22728440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 80 - 349
Target Start/End: Original strand, 9827052 - 9827328
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaat 179  Q
    |||||||||||  |||||||||| |||||||| |||| ||||||||  ||||| |||||| ||||| ||||| | ||||||| || ||||| || ||  |    
T  9827052 taatcacttaaacacacttaata-cacgtaaacgatccaaattacacaaatttgtccataaatttctaaaatgatataatctaacataaacagtcaattt 9827150  T
Q  180 taaccaaatttattgttaaattacataaacacaaattca-------tcaacaatatgaacacaaattc-gaacaaattacgatattacaagttaataaat 271  Q
    || ||||||| || |||||||||||||| ||||||||||       |||||||||   |||||||||| ||| | |||||  |||||||  | ||| |||    
T  9827151 tacccaaattcatcgttaaattacataagcacaaattcattaaaattcaacaatacatacacaaattcggaaaacattacactattacacttaaattaat 9827250  T
Q  272 attacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcatcgtcgc 349  Q
    |||||| ||||| |||||||||| ||| ||  ||||||||||| |||||||| |    ||||||||||||| ||||||    
T  9827251 attacacttcaacggatcggacaaaaagatacaaagtgttattctcaaccattaacctaaacatgtaatcaacgtcgc 9827328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 28759022 - 28758930
Alignment:
Q  231 acacaaattcgaacaaattacgatattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccat 323  Q
    ||||||||||||||| ||||   ||||||| ||| || ||||||||| ||||| ||||| |||||||| ||||||||||||||  ||||||||    
T  28759022 acacaaattcgaacacattatactattacacgttcattaatattacacttcaacggatcagacataaagatgtaaagtgttatcctcaaccat 28758930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 36342512 - 36342451
Alignment:
Q  262 gttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccat 323  Q
    ||||||||||||||||||||||||||| | ||| ||| ||||||  ||||||||| ||||||    
T  36342512 gttaataaatattacatttcaatggatagaacacaaagatgtaatatgttatttttaaccat 36342451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 35004478 - 35004416
Alignment:
Q  127 caatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaattaaccaaatt 189  Q
    |||||| |||||| ||||| ||||||||||||| | || |||||||| ||||||| |||||||    
T  35004478 caatttgtccataaatttctaaaattacataatatcacataaacggtcaaaattacccaaatt 35004416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 22728239 - 22728304
Alignment:
Q  80 taatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttc 145  Q
    |||| ||||||  ||| ||||| |||||||||||||| |||||||| |||||| |||||| |||||    
T  22728239 taatgacttaaacacatttaatgacacgtaaatgatccaaattacaccaatttgtccataaatttc 22728304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 231 - 349
Target Start/End: Original strand, 20514167 - 20514285
Alignment:
Q  231 acacaaattcgaacaaattacgatattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtga 330  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||| ||||||||||||  ||||||||||||||||||| ||    
T  20514167 acacaaattcgaacaaattacgatattacacgttaataaatattacacttcaatggatctgacgtaaatatgtaaaaggttattttcaaccatcacgcga 20514266  T
Q  331 aacatgtaatcatcgtcgc 349  Q
    ||||| |||||| ||||||    
T  20514267 aacatataatcaacgtcgc 20514285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 74 - 219
Target Start/End: Complemental strand, 54336449 - 54336304
Alignment:
Q  74 gacctttaatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggt 173  Q
    ||||| |||||||||||  ||||||||| ||||||||| |||| ||||||||  |||||  ||||| ||||| ||||||||||||||| || |||||||     
T  54336449 gacctgtaatcacttaaacacacttaatgacacgtaaacgatccaaattacacaaatttgaccataaatttctaaaattacataatctcacataaacgga 54336350  T
Q  174 aaaaattaaccaaatttattgttaaattacataaacacaaattcat 219  Q
     ||||| |  |||||| || ||||||||||||||||||||||||||    
T  54336349 caaaatgactcaaattcatcgttaaattacataaacacaaattcat 54336304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 153 - 349
Target Start/End: Complemental strand, 27934437 - 27934234
Alignment:
Q  153 acataatcttacctaaacggtaaaaattaaccaaatttattgttaaattacataaacacaaattcat-------caacaatatgaacacaaattcgaaca 245  Q
    ||||||| | || ||||||| ||||| |||  ||||| || ||||||||| ||||||||||||||||       ||||||||   ||||||||| |||||    
T  27934437 acataatgtcacataaacggcaaaaagtaa--aaattcatcgttaaattaaataaacacaaattcattaaaattcaacaatacagacacaaatttgaaca 27934340  T
Q  246 aattacgatattacaagttaataaatat--tacatttcaatggatcggacataaatatgtaaagtgttattttcaaccatcacgtgaaacatgtaatcat 343  Q
     |||||  |||||||  |||||||||||  |||| ||||  ||||| |||||||| ||||||||||||||||||||||||||||  |||||||||| ||     
T  27934339 cattacactattacacattaataaatatattacacttcacgggatcagacataaagatgtaaagtgttattttcaaccatcacgctaaacatgtaagcaa 27934240  T
Q  344 cgtcgc 349  Q
    ||||||    
T  27934239 cgtcgc 27934234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 30531344 - 30531251
Alignment:
Q  230 aacacaaattcgaacaaattacgatattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccat 323  Q
    |||| |||||| |||| |||||  ||||||| || ||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||||    
T  30531344 aacataaattcaaacacattacactattacacgtaaataaatattacacttcaacggatcggacataaagatgtaaaatgttattttcaaccat 30531251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 33291 - 33153
Alignment:
Q  81 aatcacttaattacacttaataacacgtaaatgatctaaattacatcaatttatccatacatttcgaaaattacataatcttacctaaacggtaaaaatt 180  Q
    ||||||||||  ||| ||| | ||||||||| |||| ||||||||  ||||| |||||| ||||| ||||||||||||||| || |||||||| ||||||    
T  33291 aatcacttaaacacaattattgacacgtaaacgatccaaattacacaaatttgtccataaatttctaaaattacataatctcacataaacggtcaaaatt 33192  T
Q  181 aaccaaatttattgttaaattacataaacacaaattcat 219  Q
    | ||||||| || ||||||||||||||||||| ||||||    
T  33191 acccaaattcatcgttaaattacataaacacatattcat 33153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 323
Target Start/End: Original strand, 45704 - 45801
Alignment:
Q  226 tatgaacacaaattcgaacaaattacgatattacaagttaataaatattacatttcaatggatcggacataaatatgtaaagtgttattttcaaccat 323  Q
    |||| ||||||||||||||| |||||  ||||||| || |||| |||||||| ||||||||| |||||| ||| ||||||| ||||||||||||||||    
T  45704 tatggacacaaattcgaacatattacactattacacgtcaatacatattacacttcaatggagcggacacaaagatgtaaaatgttattttcaaccat 45801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University