View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_36 (Length: 364)
Name: NF20003_high_36
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 162 - 346
Target Start/End: Original strand, 10823887 - 10824066
Alignment:
| Q |
162 |
cttagaattattgtttaattgctaaaccagatgtaccttgataaaaattaaattaaaattgtagatgctaggcacacatcccatgtaaaagccagtaaaa |
261 |
Q |
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| T |
10823887 |
cttaaaattattgtttaattgctaaaccagatgtaccttgataaaaat-----taaaattgtagatgctaggcacacatcccatgtaaaagccagtaaaa |
10823981 |
T |
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| Q |
262 |
tttatgtggtttataaacttttatcatcctattgagattgattggatgtttgggtgattttaaaatatattttgatcttaattca |
346 |
Q |
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| T |
10823982 |
tttatgtggtttataaacttttatcatcctattgagattgattggatttttgggtgattttaaaatatattttgatcttaattca |
10824066 |
T |
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Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 10823808 - 10823902
Alignment:
| Q |
56 |
atatgtcttaatttctccggagtgggaaaatggcttaataa-cctttgatatattcgaaaatagtttaactacaaataacttagaattattgttt |
149 |
Q |
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| T |
10823808 |
atatgtcttaatttctccggagttggaaaatggcttaataaacctttgatatattcgaaaatagtttaactacaaataacttaaaattattgttt |
10823902 |
T |
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