View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20003_high_37 (Length: 358)
Name: NF20003_high_37
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_37 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 19744219 - 19744544
Alignment:
| Q |
13 |
aatatactaatacatacaaaacaattcacacctatgatatgata--ggtgccaggaaatattataacccaggctttgacataagttttataaccaaccaa |
110 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19744219 |
aatatactaacacatacaaaacaattcacacctatgatatgatataggtgccaggaaatattataacccaggctttgacataaattttataaccaaccaa |
19744318 |
T |
|
| Q |
111 |
cactaataagataagatgttagccaaaatcaaaataccaggaaatatgagaaattccacttcaatatttatctttctgcattattaaatcatcgaggtat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |
|
|
| T |
19744319 |
cactaataagataagatgttagccaaaatcaaaatatcaggaaatatgagaaattccacttcaatatttatctttctgcattatt---tcattgagttta |
19744415 |
T |
|
| Q |
211 |
taggctagaaaagctcaaatacttcgaacctcaagccaccaaatccatcgacccttcctcatatatctttcacaaatgagtttctttctctccattaaac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19744416 |
taggctagaaaagctcaaatacttcgaacctgaagccaccaaatccatcgacccttcctcatatatctttcacaaatgagtttctttctctccattaaac |
19744515 |
T |
|
| Q |
311 |
tgtactgcaacaactactatcgaggctat |
339 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19744516 |
tgtactgcaacaactactatcgaggctat |
19744544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 111 - 319
Target Start/End: Original strand, 23996180 - 23996380
Alignment:
| Q |
111 |
cactaataagataagatgttagccaaaatcaaaataccaggaaatatgagaaattccacttcaatatttatctttctgcattattaaatcatcgaggtat |
210 |
Q |
| |
|
||||||||||||| || |||||||| ||| |||||| |||||||||||||||||||| |||||| ||||||||||||||| |||||||| | || || |
|
|
| T |
23996180 |
cactaataagatatgaagttagccagaataaaaatatcaggaaatatgagaaattcctcttcaaattttatctttctgcataattaaatcttggaagt-- |
23996277 |
T |
|
| Q |
211 |
taggctagaaaagctcaaatacttcgaacctcaagccaccaaatccatcgacccttcctcatatatctttcacaaatgagtttctttctctccattaaac |
310 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||||| || |
|
|
| T |
23996278 |
-----tagaaa-gctcaaataattcgaacctcaagccaccaaatccaccgacccttcctcatttatctttcgctaatgagtttctttctctccattatac |
23996371 |
T |
|
| Q |
311 |
tgtactgca |
319 |
Q |
| |
|
||||||||| |
|
|
| T |
23996372 |
tgtactgca |
23996380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 154 - 339
Target Start/End: Original strand, 1092360 - 1092544
Alignment:
| Q |
154 |
atatgagaaattccacttcaatatttatctttctgcattattaaatcatcgaggtattaggctagaaaagctcaaatacttcgaacctcaagccaccaaa |
253 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||| ||| ||||| || | ||||| ||||||| ||||||||||||||| ||||| || ||||||||| |
|
|
| T |
1092360 |
atatgagaaattccactgcgatatttatcattcttcataattaattcttggaggttacaggctagcaaagctcaaatacttggaaccacaggccaccaaa |
1092459 |
T |
|
| Q |
254 |
tccatcgacccttcctcatatatctttcacaaatgagtttctttctctccattaaactgtactgcaacaactactatcgaggctat |
339 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||||||||||||| ||||||||||||| || |||| ||||||||||||||||||| |
|
|
| T |
1092460 |
tccaccgacccttcctcgtatatctttctcaaatgagtttctttgtctccattaaact-tattgcagcaactactatcgaggctat |
1092544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 16788320 - 16788283
Alignment:
| Q |
125 |
gatgttagccaaaatcaaaataccaggaaatatgagaa |
162 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
16788320 |
gatgttagccagaatcagaataccaggaaatatgagaa |
16788283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University