View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_39 (Length: 341)
Name: NF20003_high_39
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_39 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 2496000 - 2496322
Alignment:
| Q |
17 |
ccaaagttgcatgcataaatgttgttctttaaaaaatattttgcttattgaggacaacattgatacaaccaacagatgattatnnnnnnnnnnnntaact |
116 |
Q |
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| T |
2496000 |
ccaaagttgcaagcataaatgttgttctttaaaaagaaatttgcttattgaggacaacattgatacgaccaacagatgattataaaaataaaaaatgaca |
2496099 |
T |
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| Q |
117 |
tcaacgcagatgaattttataatgaaaagattatgtgagtgaaaggtttagggaaaatctcttttcaccttctttaacatgagttgtacacatgaaaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2496100 |
tcaacgcagatgaattttataatgaaaagattatgtgagtgaaaagtttagggaaaatcccttttcaccttctttaacatgagttgtacacatgaaaaaa |
2496199 |
T |
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| Q |
217 |
taaccaatttcgttatgtttataggcacatatctagnnnnnnnnttaccatcaaatagcttttaaatacatgtgtaattttataaatgtgaacgctgaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2496200 |
taaccaatttcgttatgtttataggcacatatctagaaaaaaaattaccatcaaatagcttt--aatacatgtgtaattttataaatgtgaacgctgaaa |
2496297 |
T |
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| Q |
317 |
actgaaaagtaacaaaagttagatt |
341 |
Q |
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||||||||||||||||||||||||| |
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| T |
2496298 |
actgaaaagtaacaaaagttagatt |
2496322 |
T |
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