View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_40 (Length: 340)
Name: NF20003_high_40
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 8293700 - 8293382
Alignment:
| Q |
1 |
gcttgcgacggttgtgaatgagacagtgccggatgcggtggtggcgaaggatggaagtggacagtataagacaataggcgaggcgttgaagttggtgaag |
100 |
Q |
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| T |
8293700 |
gcttgcgacggtggtgaatgaaacagtgccggatgcggtggtggcgaaggatggaagtggacagtataagacaataggcgaggcgttgaagttggtgaag |
8293601 |
T |
|
| Q |
101 |
aagaagagtctgcagagatttgtggtgtatgtgaagaaaggggtgtatgtagagaatattgatttggataagaatacatggaatgtgatgatttatggtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8293600 |
aagaagagtctgcagagatttgtggtgtatgtgaagaaaggggtgtatgtagagaatattgatttggataagaatacatggaatgtgatgatttatggtg |
8293501 |
T |
|
| Q |
201 |
atggtatgacggaaaccgtcgtatccggtagccggaattacatcgacggcacaccaacctttgaaaccgccactttcggtaagtgtttacttttttattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8293500 |
atggtatgacggaaaccgtcgtatccggtagccggaattacatcgacggcacaccaacctttgaaaccgccactttcggtaagtgtttacttttttattc |
8293401 |
T |
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| Q |
301 |
attaatctttacagttgtg |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
8293400 |
attaatctttacagttgtg |
8293382 |
T |
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