View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_49 (Length: 320)
Name: NF20003_high_49
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 12966311 - 12966539
Alignment:
| Q |
1 |
aaagacagaattttcttgatatttaaacaccaaaaattgtgattcattcaaagacaaataatttgcaagttctttccaaccattgcaaaacataacttca |
100 |
Q |
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| T |
12966311 |
aaagacagaattttcttgatattgaaacaccaaaaattgtgattcattcaaagacaaataatttgcaagttctttccaaccattgcaaaacataacttca |
12966410 |
T |
|
| Q |
101 |
ttttcactagttttctcccaagaaactttcttttccaccatgtttggaaaccttaaaataactgggtttcttattcctttccaataccttttcacaaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12966411 |
ttttcactagttttctcccaagaaactttcttttccaccatgtttggaaaccttaaagtaactgggtttcttattcctttccaataccttttcacaaaac |
12966510 |
T |
|
| Q |
201 |
ttatgggcacactctgtaacaaacacaca |
229 |
Q |
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| T |
12966511 |
ttatgggcacactctgtaaaaaacacaca |
12966539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 12866882 - 12866676
Alignment:
| Q |
1 |
aaagacagaattttcttgatatttaaacaccaaaaattgtgattcattcaaagacaaataatttgcaagttctttccaaccattgcaaaacataacttca |
100 |
Q |
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| T |
12866882 |
aaagagagaattttcttgatattgaaacatcaaaagttgcaaatcacgcaaagataaataatctgtaaattctttccaaccaccgcaaaacctaacaaca |
12866783 |
T |
|
| Q |
101 |
ttttcactagttttctcccaagaaactttcttttccaccatgtttggaaaccttaaaataactgggtttcttattcctttccaataccttttcacaaaac |
200 |
Q |
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| T |
12866782 |
tggtgactagttttcttccaaaaaactttcttttcggtcgtgtttggaagccttagagtaactgggtttgttactcgttgccaatgccttttcacgaaac |
12866683 |
T |
|
| Q |
201 |
ttatggg |
207 |
Q |
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||||||| |
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| T |
12866682 |
ttatggg |
12866676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 49742746 - 49742541
Alignment:
| Q |
5 |
acagaattttcttgatatttaaacaccaaaaattgtgattcattcaaagacaaataatttgcaagttctttccaaccattgcaaaacataacttcatttt |
104 |
Q |
| |
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||||||||||||||||||| ||||| | || ||||| ||| |||||||||||| ||||||| |||||||||||||||||||||| ||| | || | |
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| T |
49742746 |
acagaattttcttgatattgaaacaacgtaagctgtgaatcacccaaagacaaatattttgcaaattctttccaaccattgcaaaaccaaacattataat |
49742647 |
T |
|
| Q |
105 |
cactagttttctcccaagaaactttcttttccaccatgtttggaaaccttaaaataactgggtttcttattcctttccaataccttttcacaaaacttat |
204 |
Q |
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||||||||||||||||| ||||||| ||||| ||| ||||||| |||| | ||||||| ||| |||| ||| ||||| |||| |||||||||||| |
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| T |
49742646 |
cactagttttctcccaaaaaactttattttcggtcatatttggaagtcttagagtaactggatttgttatacctagccaatgccttctcacaaaacttac |
49742547 |
T |
|
| Q |
205 |
gggcac |
210 |
Q |
| |
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|||||| |
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| T |
49742546 |
gggcac |
49742541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 15134117 - 15133931
Alignment:
| Q |
29 |
accaaaaattgtgattcattcaaagacaaataatttgcaagttctttccaaccattgcaaaacataacttcattttcactagttttctcccaagaaactt |
128 |
Q |
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||||||| |||||| ||| |||||||||||||||||||| |||||||||||||||||||||| ||| |||| ||||| ||||||||||||| ||| | |
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| T |
15134117 |
accaaaagttgtgaatcacgcaaagacaaataatttgcaaattctttccaaccattgcaaaaccaaacatcataatcactggttttctcccaagtaacgt |
15134018 |
T |
|
| Q |
129 |
tcttttccaccatgtttggaaaccttaaaataactgggtttcttattcctttccaataccttttcacaaaacttatgggcacactct |
215 |
Q |
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|| ||| |||| |||||| ||||| | | ||||||||| ||||||| | ||||| ||| || ||||| |||| ||||| |||| |
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| T |
15134017 |
tcatttgtgccatagttggaagccttagagtgactgggtttgttattccatgccaatgcctcctcgcaaaatttattggcactctct |
15133931 |
T |
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