View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20003_high_51 (Length: 305)

Name: NF20003_high_51
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20003_high_51
NF20003_high_51
[»] chr7 (3 HSPs)
chr7 (11-287)||(46129100-46129381)
chr7 (4-287)||(46701912-46702189)
chr7 (11-158)||(46123110-46123256)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 46129100 - 46129381
Alignment:
Q  11 taatactccattagtaattgaaaatggttaataatatgactctaacgaaatatgctaaacttgacacttaa-tgttagaaggatagagtagaagaactaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46129100 taatactccattagtaattgaaaatggttaataatatgactctaacgaaatatgctaaacttgacacttaaatgttagaaggatagagtagaagaactaa 46129199  T
Q  110 ttattctatgatgttaagataccaaaaatttgttgtattgttggaaaattcaaaattgtaattaatactttcatgttttagaatttagggtaactatgat 209  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46129200 ttattccatgatgttaagataccaaaaatttgttgtattgttggaaaattcaaaattgtaattaatactttcatgttttagaatttagggtaactatgat 46129299  T
Q  210 ag----ttgttccatatcaagagcatagccatgattaaggagcggtaccaattgccaatataagaggctttaacagaattct 287  Q
    |     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46129300 atataattgttccatatcaagagcatagccatgattaaggagcggtaccaattgccaatataagaggctttaacagaattct 46129381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 287
Target Start/End: Original strand, 46701912 - 46702189
Alignment:
Q  4 gggtagataatactccattagtaattgaaaatggttaataatatgactctaacgaaatatgctaaacttgacacttaatgttagaaggatagagtagaag 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  46701912 gggtaaataatactccattagtaat-gaaaatggttaataatatgactctaacgaaatatgccaaacttgacacttaatgttagaaggatagattagaag 46702010  T
Q  104 aactaattattctatg--atgttaagataccaaaaatttgttgtattgttggaaaattcaaaattgtaattaatactttcatgttttagaatttagggta 201  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  46702011 aactaattattctatgatatgttaagataccaaaaatttgttgtattgttgg-------aaaattgtaattaatactttcatgttttagaatttagggta 46702103  T
Q  202 actatgatagttgttccatatcaagagcatagccatgattaaggagcggtaccaattgccaatataagaggctttaacagaattct 287  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  46702104 actatgataattgttccatatcaagagcatagccatgattaaggagcgataccaattgccaatataagaggctttatcagaattct 46702189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 46123110 - 46123256
Alignment:
Q  11 taatactccattagtaattgaaaatggttaataatatgactctaacgaaatatgctaaacttgacacttaatgttagaaggatagagtagaagaactaat 110  Q
    |||| |||||||||||||| |||||||   |||||||||| | |||||| ||| |||||||||| | | ||||  ||| |||  ||||| |||||||||     
T  46123110 taatgctccattagtaatttaaaatggcagataatatgacacaaacgaattattctaaacttgaaattaaatg--agatggagggagtaaaagaactaac 46123207  T
Q  111 tattctatg--atgttaagataccaaaaatttgttgtattgttggaaaat 158  Q
    || ||||||  |||||||||||||||||| ||| |||||| |||||||||    
T  46123208 tagtctatgatatgttaagataccaaaaacttg-tgtattattggaaaat 46123256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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