View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20003_high_53 (Length: 290)

Name: NF20003_high_53
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20003_high_53
NF20003_high_53
[»] chr1 (6 HSPs)
chr1 (1-185)||(3301732-3301916)
chr1 (184-276)||(3301606-3301698)
chr1 (121-170)||(26392975-26393024)
chr1 (33-90)||(33765076-33765133)
chr1 (41-73)||(3332558-3332590)
chr1 (41-73)||(48466046-48466078)
[»] chr3 (2 HSPs)
chr3 (97-172)||(8787540-8787615)
chr3 (122-170)||(28596851-28596899)
[»] scaffold1527 (1 HSPs)
scaffold1527 (102-171)||(191-260)
[»] chr8 (8 HSPs)
chr8 (102-171)||(23161485-23161554)
chr8 (102-171)||(23162136-23162205)
chr8 (102-171)||(23162787-23162856)
chr8 (102-171)||(23163438-23163507)
chr8 (102-171)||(23164089-23164158)
chr8 (102-171)||(23164740-23164809)
chr8 (102-171)||(23165391-23165460)
chr8 (102-171)||(23166042-23166111)
[»] chr4 (1 HSPs)
chr4 (98-151)||(43541979-43542032)
[»] chr2 (4 HSPs)
chr2 (40-77)||(38833776-38833813)
chr2 (41-80)||(35994131-35994170)
chr2 (40-73)||(8757056-8757089)
chr2 (99-164)||(10408631-10408696)
[»] chr6 (4 HSPs)
chr6 (98-170)||(22994088-22994160)
chr6 (98-170)||(23794238-23794310)
chr6 (41-77)||(19050439-19050475)
chr6 (98-162)||(27834741-27834805)
[»] chr5 (1 HSPs)
chr5 (41-73)||(25025764-25025796)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 8e-98; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 3301916 - 3301732
Alignment:
Q  1 cgccgactctgtcaaattttagtctattactctgaaaacgtgttagggactaaattgatagtaagtggttaaacatagagttttaattgataacagcttg 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3301916 cgccgactctgtcaaattttagtctattagtctgaaaacgtgttagggactaaattgatagtaagtggttaaacatagagttttaattgataacagcttg 3301817  T
Q  101 ttaaaatataggaacgtaactgatagtagatggttaaatatagggaccaacatgatagtttaatagagtcagggactaatttggt 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3301816 ttaaaatataggaacgtaactgatagtagatggttaaatatagggaccaacatgatagtttaatagagtcagggactaatttggt 3301732  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 3301698 - 3301606
Alignment:
Q  184 gtttgttttcctatcatgttgtgtttgatctatctgctgaaacactcggtgtctatgctactggatattgatttattgacttgaattttgtat 276  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3301698 gtttgttttcgtatcatgttgtgtttgatctatctgctgaaacactcggtgtctatgctactggatattgaattattgacttgaattttgtat 3301606  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 26393024 - 26392975
Alignment:
Q  121 tgatagtagatggttaaatatagggaccaacatgatagtttaatagagtc 170  Q
    |||||||| |||||||||||||||||||||| ||| ||||||||||||||    
T  26393024 tgatagtaaatggttaaatatagggaccaacttgacagtttaatagagtc 26392975  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 33765133 - 33765076
Alignment:
Q  33 tgaaaacgtgttagggactaaattgatagtaagtggttaaacatagagttttaattga 90  Q
    ||||||| | |||| |||||||||||||||||||||||||| |||||| | |||||||    
T  33765133 tgaaaacatattagtgactaaattgatagtaagtggttaaagatagagatctaattga 33765076  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 3332558 - 3332590
Alignment:
Q  41 tgttagggactaaattgatagtaagtggttaaa 73  Q
    ||||| |||||||||||||||||||||||||||    
T  3332558 tgttatggactaaattgatagtaagtggttaaa 3332590  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 48466078 - 48466046
Alignment:
Q  41 tgttagggactaaattgatagtaagtggttaaa 73  Q
    |||||||||||||||||||||||||| ||||||    
T  48466078 tgttagggactaaattgatagtaagttgttaaa 48466046  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 8787540 - 8787615
Alignment:
Q  97 cttgttaaaatataggaacgtaactgatagtagatggttaaatatagggaccaacatgatagtttaatagagtcag 172  Q
    |||||||||||||||| || | | ||||||||| || |||||||||||||| ||| ||| | ||||||||||||||    
T  8787540 cttgttaaaatatagggacttgattgatagtaggtgattaaatatagggacaaacctgacactttaatagagtcag 8787615  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 28596851 - 28596899
Alignment:
Q  122 gatagtagatggttaaatatagggaccaacatgatagtttaatagagtc 170  Q
    |||||||  |||| |||||||||||||||| ||| ||||||||||||||    
T  28596851 gatagtaagtggtgaaatatagggaccaacttgacagtttaatagagtc 28596899  T

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Target: scaffold1527 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1527
Description:

Target: scaffold1527; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 191 - 260
Alignment:
Q  102 taaaatataggaacgtaactgatagtagatggttaaatatagggaccaacatgatagtttaatagagtca 171  Q
    ||||||||| | || ||| ||||||||| ||| ||||||||||||||||| |||  ||||||||||||||    
T  191 taaaatataaggacctaattgatagtaggtggctaaatatagggaccaacttgacggtttaatagagtca 260  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 23161554 - 23161485
Alignment:
Q  102 taaaatataggaacgtaactgatagtagatggttaaatatagggaccaacatgatagtttaatagagtca 171  Q
    ||||||||| | || ||| ||||||||| ||| ||||||||||||||||| |||  ||||||||||||||    
T  23161554 taaaatataaggacctaattgatagtaggtggctaaatatagggaccaacttgacggtttaatagagtca 23161485  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 23162205 - 23162136
Alignment:
Q  102 taaaatataggaacgtaactgatagtagatggttaaatatagggaccaacatgatagtttaatagagtca 171  Q
    ||||||||| | || ||| ||||||||| ||| ||||||||||||||||| |||  ||||||||||||||    
T  23162205 taaaatataaggacctaattgatagtaggtggctaaatatagggaccaacttgacggtttaatagagtca 23162136  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 23162856 - 23162787
Alignment:
Q  102 taaaatataggaacgtaactgatagtagatggttaaatatagggaccaacatgatagtttaatagagtca 171  Q
    ||||||||| | || ||| ||||||||| ||| ||||||||||||||||| |||  ||||||||||||||    
T  23162856 taaaatataaggacctaattgatagtaggtggctaaatatagggaccaacttgacggtttaatagagtca 23162787  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 23163507 - 23163438
Alignment:
Q  102 taaaatataggaacgtaactgatagtagatggttaaatatagggaccaacatgatagtttaatagagtca 171  Q
    ||||||||| | || ||| ||||||||| ||| ||||||||||||||||| |||  ||||||||||||||    
T  23163507 taaaatataaggacctaattgatagtaggtggctaaatatagggaccaacttgacggtttaatagagtca 23163438  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 23164158 - 23164089
Alignment:
Q  102 taaaatataggaacgtaactgatagtagatggttaaatatagggaccaacatgatagtttaatagagtca 171  Q
    ||||||||| | || ||| ||||||||| ||| ||||||||||||||||| |||  ||||||||||||||    
T  23164158 taaaatataaggacctaattgatagtaggtggctaaatatagggaccaacttgacggtttaatagagtca 23164089  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 23164809 - 23164740
Alignment:
Q  102 taaaatataggaacgtaactgatagtagatggttaaatatagggaccaacatgatagtttaatagagtca 171  Q
    ||||||||| | || ||| ||||||||| ||| ||||||||||||||||| |||  ||||||||||||||    
T  23164809 taaaatataaggacctaattgatagtaggtggctaaatatagggaccaacttgacggtttaatagagtca 23164740  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 23165460 - 23165391
Alignment:
Q  102 taaaatataggaacgtaactgatagtagatggttaaatatagggaccaacatgatagtttaatagagtca 171  Q
    ||||||||| | || ||| ||||||||| ||| ||||||||||||||||| |||  ||||||||||||||    
T  23165460 taaaatataaggacctaattgatagtaggtggctaaatatagggaccaacttgacggtttaatagagtca 23165391  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 23166111 - 23166042
Alignment:
Q  102 taaaatataggaacgtaactgatagtagatggttaaatatagggaccaacatgatagtttaatagagtca 171  Q
    ||||||||| | || ||| ||||||||| ||| ||||||||||||||||| |||  ||||||||||||||    
T  23166111 taaaatataaggacctaattgatagtaggtggctaaatatagggaccaacttgacggtttaatagagtca 23166042  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 43541979 - 43542032
Alignment:
Q  98 ttgttaaaatataggaacgtaactgatagtagatggttaaatatagggaccaac 151  Q
    ||||||||||||| |||| ||| ||||| |||||||||||||||| ||||||||    
T  43541979 ttgttaaaatataagaacttaattgatattagatggttaaatataaggaccaac 43542032  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 38833776 - 38833813
Alignment:
Q  40 gtgttagggactaaattgatagtaagtggttaaacata 77  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  38833776 gtgttagggactaaattgataataagtggttaaacata 38833813  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 35994170 - 35994131
Alignment:
Q  41 tgttagggactaaattgatagtaagtggttaaacatagag 80  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  35994170 tgttagagactaaattgatagtaagtggttaaaaatagag 35994131  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 8757089 - 8757056
Alignment:
Q  40 gtgttagggactaaattgatagtaagtggttaaa 73  Q
    |||||| |||||||||||||||||||||||||||    
T  8757089 gtgttatggactaaattgatagtaagtggttaaa 8757056  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 10408696 - 10408631
Alignment:
Q  99 tgttaaaatataggaacgtaactgatagtagatggttaaatatagggaccaacatgatagtttaat 164  Q
    ||||||||||||||||| ||| ||||||||  ||||||| ||||| ||||||| |||  |||||||    
T  10408696 tgttaaaatataggaacctaattgatagtaagtggttaagtatagagaccaacttgaccgtttaat 10408631  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 22994160 - 22994088
Alignment:
Q  98 ttgttaaaatataggaacgtaactgatagtagatggttaaatatagggaccaacatgatagtttaatagagtc 170  Q
    |||| |||||||||| || ||| |||||||| || |||||||||| ||| |||| ||| ||||||||||||||    
T  22994160 ttgtaaaaatataggtacctaattgatagtaaatagttaaatataaggatcaacttgacagtttaatagagtc 22994088  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 23794238 - 23794310
Alignment:
Q  98 ttgttaaaatataggaacgtaactgatagtagatggttaaatatagggaccaacatgatagtttaatagagtc 170  Q
    |||| |||||||||| || ||| |||||||| || |||||||||| ||| |||| ||| ||||||||||||||    
T  23794238 ttgtaaaaatataggtacctaattgatagtaaatagttaaatataaggatcaacttgacagtttaatagagtc 23794310  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 19050439 - 19050475
Alignment:
Q  41 tgttagggactaaattgatagtaagtggttaaacata 77  Q
    |||||||||||||||||| |||||||||||| |||||    
T  19050439 tgttagggactaaattgacagtaagtggttagacata 19050475  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 27834741 - 27834805
Alignment:
Q  98 ttgttaaaatataggaacgtaactgatagtagatggttaaatatagggaccaacatgatagttta 162  Q
    ||||||||||||| ||||  || |||| |||  |||||||||||||| |||||| ||||||||||    
T  27834741 ttgttaaaatataagaacaaaattgatggtaagtggttaaatataggtaccaacttgatagttta 27834805  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 25025764 - 25025796
Alignment:
Q  41 tgttagggactaaattgatagtaagtggttaaa 73  Q
    |||||||||||||||||||||||||||||||||    
T  25025764 tgttagggactaaattgatagtaagtggttaaa 25025796  T

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