View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20003_high_55 (Length: 284)
Name: NF20003_high_55
Description: NF20003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20003_high_55 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 111 - 265
Target Start/End: Original strand, 2496421 - 2496583
Alignment:
| Q |
111 |
tatcaggaacacaggtctcatcatatcat--------acatatgaaaaagatgactgtaaaagtggtacaaagacaactaaacattctataaaagatttg |
202 |
Q |
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| T |
2496421 |
tatcaggaacacaggtctcatcatatcatacattcatacatatgaaaaagatgactgcaaaagtggtacaaagacaactaaacattctataaaagatttg |
2496520 |
T |
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| Q |
203 |
nnnnnnnttgacaacataacaatacataggaaaagcaaatgctttctattcccgagcaacgac |
265 |
Q |
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| T |
2496521 |
aaaaaaattgacaacataacaatacataggaaaagcaaatgctttctattcccgagcaacgac |
2496583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 2496323 - 2496404
Alignment:
| Q |
1 |
gatccaaactaaaaaatgtttagatgacaatgcacaaaggcaagcaaatgcttttattttctatcaataacactaatacatt |
82 |
Q |
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| T |
2496323 |
gatccaaactaaaaaatgtttagatgacaatgcacaaaggcaagcaaatgcttttattttctatcaataacactaatacatt |
2496404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 109 - 262
Target Start/End: Original strand, 2515998 - 2516153
Alignment:
| Q |
109 |
attatcaggaacacaggtctcatcatat---catacatatgaaaaa-gatgactgtaaaagtggtacaaagacaactaaacattctataaaagatttgnn |
204 |
Q |
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|||||||||||||||| ||||||||||| |||| |||||||||| ||||||| || |||||| ||||||| |||||| ||||| |||||||||| |
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| T |
2515998 |
attatcaggaacacag-tctcatcatatattcatagatatgaaaaaagatgactaccaaggtggtataaagacagctaaactttctagaaaagatttgaa |
2516096 |
T |
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| Q |
205 |
nnnnnttgacaacataacaatacataggaaaagcaaatgctttctattcccgagcaac |
262 |
Q |
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| T |
2516097 |
aaaa-ttgacaacataacaaaacataggaaaaacaaatgctttctattcacgagcaac |
2516153 |
T |
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